Comparing RR42_RS16980 FitnessBrowser__Cup4G11:RR42_RS16980 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3ip9A Structure of atu2422-gaba receptor in complex with gaba (see paper)
39% identity, 85% coverage: 48:389/401 of query aligns to 2:336/348 of 3ip9A
3ip7A Structure of atu2422-gaba receptor in complex with valine (see paper)
39% identity, 85% coverage: 48:389/401 of query aligns to 2:336/348 of 3ip7A
3ip6A Structure of atu2422-gaba receptor in complex with proline (see paper)
39% identity, 85% coverage: 48:389/401 of query aligns to 2:336/348 of 3ip6A
3ip5A Structure of atu2422-gaba receptor in complex with alanine (see paper)
39% identity, 85% coverage: 48:389/401 of query aligns to 2:336/348 of 3ip5A
3ipcA Structure of atu2422-gaba f77a mutant receptor in complex with leucine (see paper)
39% identity, 85% coverage: 48:389/401 of query aligns to 2:336/348 of 3ipcA
1uskA L-leucine-binding protein with leucine bound (see paper)
33% identity, 84% coverage: 51:388/401 of query aligns to 3:336/345 of 1uskA
1usiA L-leucine-binding protein with phenylalanine bound (see paper)
33% identity, 84% coverage: 51:388/401 of query aligns to 3:336/345 of 1usiA
4n0qB Crystal structure of an abc transporter, substrate-binding protein from brucella melitensis 16m in complex with l-leucine using a crystal grown in a crystal former (microlytic)
32% identity, 85% coverage: 51:392/401 of query aligns to 3:341/345 of 4n0qB
1z18A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound valine (see paper)
29% identity, 84% coverage: 51:388/401 of query aligns to 3:334/344 of 1z18A
1z17A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound ligand isoleucine (see paper)
29% identity, 84% coverage: 51:388/401 of query aligns to 3:334/344 of 1z17A
1z16A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound leucine (see paper)
29% identity, 84% coverage: 51:388/401 of query aligns to 3:334/344 of 1z16A
4mlcA Abc transporter substrate-binding protein fromdesulfitobacterium hafniense
32% identity, 86% coverage: 51:396/401 of query aligns to 3:336/336 of 4mlcA
4q6bA Crystal structure of abc transporter substrate-binding protein fromdesulfitobacterium hafniense complex with leu
32% identity, 86% coverage: 51:396/401 of query aligns to 3:335/335 of 4q6bA
4gnrA 1.0 angstrom resolution crystal structure of the branched-chain amino acid transporter substrate binding protein livj from streptococcus pneumoniae str. Canada mdr_19a in complex with isoleucine
34% identity, 81% coverage: 51:373/401 of query aligns to 3:321/348 of 4gnrA
3td9A Crystal structure of a leucine binding protein livk (tm1135) from thermotoga maritima msb8 at 1.90 a resolution
31% identity, 82% coverage: 50:377/401 of query aligns to 1:324/350 of 3td9A
4q6wA Crystal structure of periplasmic binding protein type 1 from bordetella pertussis tohama i complexed with 3-hydroxy benzoic acid
26% identity, 85% coverage: 51:391/401 of query aligns to 4:366/376 of 4q6wA
4rdcA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with proline
26% identity, 85% coverage: 51:392/401 of query aligns to 3:353/364 of 4rdcA
4qymA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with methionine
26% identity, 85% coverage: 51:392/401 of query aligns to 3:353/364 of 4qymA
4otzA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with cystein
26% identity, 85% coverage: 51:392/401 of query aligns to 3:353/364 of 4otzA
4og2A The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with leucine
26% identity, 85% coverage: 51:392/401 of query aligns to 3:353/364 of 4og2A
>RR42_RS16980 FitnessBrowser__Cup4G11:RR42_RS16980
MQITFAKILPIAAAVALVTACGKKEEKPADAAASAPAAATAPAAGSGDVVVKIGHAAPLT
GGIAHLGKDNENGARLAVEEVNKTGLEINGKKIKLELVGEDDAGDPKTGTAVAQKLVDAK
VVAVVGHLNSGVSIPASKIYSDAGIVQISPSSTNPDYTKQGFKTTFRVVATDAQQGPALA
NYATKSLHAKSVAIVDDATAYGKGLADEFEKTAKASGVNVVAREATNDKATDFKAILTKI
KGKKPDVIMYGGMDATGGPFAKQAKELGISSKIVGGDGVCTDKVAELAGDAVSNIICSEA
GLALSKMEQGADFDKRYQARFNAPVQIYAPFTYDAVMVIVDAMKRANSTEPAAILAEMPK
TNYKGLIGNIAFDEKGDMKEGTITLYEYKDKKKTVLDVVKM
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory