Comparing RR42_RS17645 FitnessBrowser__Cup4G11:RR42_RS17645 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3pgjA 2.49 angstrom resolution crystal structure of shikimate 5- dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate
49% identity, 96% coverage: 8:286/291 of query aligns to 2:271/272 of 3pgjA
Q9KVT3 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
49% identity, 96% coverage: 8:286/291 of query aligns to 6:275/278 of Q9KVT3
P15770 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli (strain K12) (see paper)
47% identity, 96% coverage: 8:287/291 of query aligns to 2:272/272 of P15770
1nytA Shikimate dehydrogenase aroe complexed with NADP+ (see paper)
47% identity, 96% coverage: 8:285/291 of query aligns to 2:270/271 of 1nytA
3sefA 2.4 angstrom resolution crystal structure of shikimate 5-dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate and NADPH
48% identity, 96% coverage: 8:286/291 of query aligns to 2:267/268 of 3sefA
3sefC 2.4 angstrom resolution crystal structure of shikimate 5-dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate and NADPH
46% identity, 96% coverage: 8:286/291 of query aligns to 2:244/244 of 3sefC
P43876 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see paper)
41% identity, 96% coverage: 8:285/291 of query aligns to 2:271/272 of P43876
1p77A Crystal structure of shikimate dehydrogenase (aroe) from haemophilus influenzae (see paper)
41% identity, 96% coverage: 8:285/291 of query aligns to 2:264/265 of 1p77A
Q58484 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
35% identity, 90% coverage: 12:272/291 of query aligns to 11:267/282 of Q58484
1nvtB Crystal structure of shikimate dehydrogenase (aroe or mj1084) in complex with NADP+ (see paper)
35% identity, 90% coverage: 12:272/291 of query aligns to 16:272/287 of 1nvtB
1nvtA Crystal structure of shikimate dehydrogenase (aroe or mj1084) in complex with NADP+ (see paper)
35% identity, 90% coverage: 12:272/291 of query aligns to 16:272/287 of 1nvtA
Q5HNV1 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (see paper)
30% identity, 96% coverage: 9:288/291 of query aligns to 2:268/269 of Q5HNV1
3dooA Crystal structure of shikimate dehydrogenase from staphylococcus epidermidis complexed with shikimate (see paper)
31% identity, 91% coverage: 9:272/291 of query aligns to 2:243/258 of 3dooA
3phiA Shikimate 5-dehydrogenase (aroe) from helicobacter pylori in complex with shikimate and NADPH
32% identity, 93% coverage: 12:283/291 of query aligns to 8:258/259 of 3phiA
P56119 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
31% identity, 94% coverage: 12:285/291 of query aligns to 8:263/263 of P56119
2hk9B Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
32% identity, 89% coverage: 10:269/291 of query aligns to 9:252/267 of 2hk9B
2hk9A Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
32% identity, 89% coverage: 10:269/291 of query aligns to 9:252/269 of 2hk9A
O67049 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus (strain VF5) (see paper)
32% identity, 89% coverage: 10:269/291 of query aligns to 9:252/269 of O67049
4fosA Crystal structure of shikimate dehydrogenase (aroe) q237a mutant from helicobacter pylori in complex with shikimate
31% identity, 94% coverage: 12:285/291 of query aligns to 8:263/263 of 4fosA
3phjA Shikimate 5-dehydrogenase (aroe) from helicobacter pylori in complex with 3-dehydroshikimate
31% identity, 94% coverage: 12:285/291 of query aligns to 8:255/255 of 3phjA
>RR42_RS17645 FitnessBrowser__Cup4G11:RR42_RS17645
MQSQTPADRYVVIGNPIAHSRSPAIHAAFAQQTGEAVEYERLLAPLDGFVATVRAFFDGG
GHGLNVTVPFKLEAYDLAERLTPRAESAGAVNTMWIEDGVIHGDNTDGVGLTRDIEVNLD
TLLEGKRILLLGAGGAAMGAMLPLIACRPERIVVANRTPQRASDILENVAQQADEYGVEL
WGGGFDALAGLTDEDACDVVINATSSSLQGELPPVPAELLGKGVLAYDMMYGAEPTVFLK
FAAQCGARTSDGLGMLVEQAAEAFYNWRGVRPATAPVLATLRAALQAEAAR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory