SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS18875 FitnessBrowser__Cup4G11:RR42_RS18875 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

6j2lA Crystal structure of bi-functional enzyme (see paper)
35% identity, 78% coverage: 12:109/126 of query aligns to 114:200/200 of 6j2lA

query
sites
6j2lA
L
 
L
A
 
Y
R
 
Q
L
 
L
A
 
E
A
 
Q
V
 
L
L
 
L
E
 
A
S
 
E
R
 
R
K
 
K
P
 
-
E
 
-
N
 
-
G
 
Y
G
 
A
D
 
D
P
 
P
D
 
E
K
 
T
S
 
S
Y
 
Y
V
 
T
A
 
A
R
 
K
L
 
L
F
 
Y
H
 
A
K
 
S
G
 
G
D
 
T
D
 
K
A
 
R
I
 
I
L
 
A
K
 
Q
K
 
K
I
 
V
G
 
G
E
 
E
E
|
E
A
 
G
T
 
V
E
 
E
T
 
T
V
 
A
M
 
L
A
 
A
A
 
A
K
 
T
D
 
V
A
 
H
R
 
D
A
 
R
A
 
F
G
 
E
L
 
L
G
 
T
P
 
N
E
|
E
A
 
A
V
 
-
G
 
-
K
 
-
V
 
-
V
 
-
Y
 
-
E
 
-
V
 
-
A
 
S
D
|
D
L
 
L
W
 
M
F
 
Y
H
 
H
S
 
L
M
 
L
V
 
V
L
 
L
L
 
L
A
 
Q
R
 
D
F
 
Q
G
 
D
L
 
L
K
 
D
P
 
L
A
 
T
D
 
T
V
 
V
V
 
I
N
 
E
E
 
N
L
 
L
A
 
H
R
 
K
R
 
R

Sites not aligning to the query:

Query Sequence

>RR42_RS18875 FitnessBrowser__Cup4G11:RR42_RS18875
MSEQHLSSTDVLARLAAVLESRKPENGGDPDKSYVARLFHKGDDAILKKIGEEATETVMA
AKDARAAGLGPEAVGKVVYEVADLWFHSMVLLARFGLKPADVVNELARREGLSGLEEKAQ
RKADGG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory