Comparing RR42_RS19700 FitnessBrowser__Cup4G11:RR42_RS19700 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
2xtsD Crystal structure of the sulfane dehydrogenase soxcd from paracoccus pantotrophus (see paper)
37% identity, 55% coverage: 23:209/337 of query aligns to 1:173/204 of 2xtsD
2d0sA Crystal structure of the cytochrome c552 from moderate thermophilic bacterium, hydrogenophilus thermoluteolus (see paper)
48% identity, 23% coverage: 261:337/337 of query aligns to 4:79/79 of 2d0sA
5xecA Heterodimer constructed from pa cyt c551-ht cyt c552 and ht cyt c552- pa cyt c551 chimeric proteins (see paper)
54% identity, 21% coverage: 267:337/337 of query aligns to 12:82/82 of 5xecA
5aurA Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at n-terminal region (see paper)
51% identity, 23% coverage: 260:337/337 of query aligns to 3:83/83 of 5aurA
1a56A Primary sequence and solution conformation of ferricytochromE C-552 from nitrosomonas europaea, nmr, mean structure refined with explicit hydrogen bond constraints (see paper)
43% identity, 23% coverage: 259:337/337 of query aligns to 2:81/81 of 1a56A
1corA Investigation of the solution conformation of cytochromE C-551 from pseudomonas stutzeri (see paper)
48% identity, 24% coverage: 258:337/337 of query aligns to 3:82/82 of 1corA
2exvA Crystal structure of the f7a mutant of the cytochrome c551 from pseudomonas aeruginosa (see paper)
46% identity, 23% coverage: 261:337/337 of query aligns to 6:82/82 of 2exvA
5xecC Heterodimer constructed from pa cyt c551-ht cyt c552 and ht cyt c552- pa cyt c551 chimeric proteins (see paper)
46% identity, 23% coverage: 260:337/337 of query aligns to 3:80/80 of 5xecC
P00099 Cytochrome c-551; Cytochrome C8; Cytochrome c551 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 4 papers)
47% identity, 21% coverage: 267:337/337 of query aligns to 34:104/104 of P00099
Sites not aligning to the query:
351cA Structure of cytochrome c551 from p. Aeruginosa refined at 1.6 angstroms resolution and comparison of the two redox forms (see paper)
47% identity, 21% coverage: 267:337/337 of query aligns to 12:82/82 of 351cA
6kq1A Crystal structure of cytochrome c551 from pseudomonas sp. Strain mt-1.
44% identity, 24% coverage: 258:337/337 of query aligns to 3:82/82 of 6kq1A
Sites not aligning to the query:
1cchA The solution conformation of cytochromE C-551 from p.Stutzeri zobell determined by nmr+ (see paper)
41% identity, 24% coverage: 258:337/337 of query aligns to 3:82/82 of 1cchA
4xxlA Crystal structure of class 1 cytochrome mtod from sideroxydans lithotrophicus es-1 (see paper)
31% identity, 23% coverage: 257:334/337 of query aligns to 6:88/92 of 4xxlA
>RR42_RS19700 FitnessBrowser__Cup4G11:RR42_RS19700
MLACAAALCVQVAMAAAPADSARAALGRTATPAEVKAWDIDVRPDFQGLPKGSGTVSQGQ
KIWDGKCASCHGDFGESNEVFSPIVGGTSAEDIRRGRVASLTGNQPYRTTLMKVSTVSTL
WDYIHRAMPWNAPRSLSADDVYAVTAYLLNLGDIVPAEFTLSDGNIAEVQQKMPNRNGMT
LQHGLWPGRGRADTRNAACMKDCTPTVRIVSTMPAYARDAHGDLAAQQRTVGPTRGWAGG
GASAPAAATPATLGETAGAKLASQYQCMACHATDRKLVGPSFAEVARKYQGQDAQDALAH
KIRAGGQGAWGSMPMPPQAQIPDSDLRTVVGWILEAK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory