Comparing RR42_RS19750 FitnessBrowser__Cup4G11:RR42_RS19750 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
2xf4A Crystal structure of salmonella enterica serovar typhimurium ycbl (see paper)
53% identity, 97% coverage: 1:210/216 of query aligns to 1:210/210 of 2xf4A
7ev5A Crystal structure of bleg-1 b3 metallo-beta-lactamase (see paper)
34% identity, 94% coverage: 6:209/216 of query aligns to 5:208/209 of 7ev5A
2zwrB Crystal structure of ttha1623 from thermus thermophilus hb8 (see paper)
33% identity, 96% coverage: 1:208/216 of query aligns to 1:200/207 of 2zwrB
2zziA Crystal structure of ttha1623 in a di-iron-bound form (see paper)
33% identity, 94% coverage: 5:208/216 of query aligns to 1:198/198 of 2zziA
7l0bA Crystal structure of hydroxyacyl glutathione hydrolase (glob) from staphylococcus aureus, apoenzyme (see paper)
30% identity, 87% coverage: 21:208/216 of query aligns to 20:200/202 of 7l0bA
5ve5A Crystal structure of persulfide dioxygenase rhodanese fusion protein with rhodanese domain inactivating mutation (c314s) from burkholderia phytofirmans in complex with glutathione (see paper)
31% identity, 92% coverage: 17:214/216 of query aligns to 20:202/350 of 5ve5A
Sites not aligning to the query:
6sg9FL uS3m (see paper)
27% identity, 90% coverage: 11:205/216 of query aligns to 62:294/320 of 6sg9FL
Sites not aligning to the query:
4chlB Human ethylmalonic encephalopathy protein 1 (hethe1) (see paper)
30% identity, 88% coverage: 17:206/216 of query aligns to 23:197/237 of 4chlB
O95571 Persulfide dioxygenase ETHE1, mitochondrial; Ethylmalonic encephalopathy protein 1; Hepatoma subtracted clone one protein; Sulfur dioxygenase ETHE1; EC 1.13.11.18 from Homo sapiens (Human) (see 4 papers)
30% identity, 88% coverage: 17:206/216 of query aligns to 39:213/254 of O95571
Sites not aligning to the query:
2gcuA X-ray structure of gene product from arabidopsis thaliana at1g53580 (see paper)
30% identity, 84% coverage: 26:206/216 of query aligns to 30:201/244 of 2gcuA
Q9C8L4 Persulfide dioxygenase ETHE1 homolog, mitochondrial; Glyoxalase II; Glx II; Sulfur dioxygenase ETHE1; EC 1.13.11.18 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
30% identity, 84% coverage: 26:206/216 of query aligns to 79:250/294 of Q9C8L4
4ysbA Crystal structure of ethe1 from myxococcus xanthus (see paper)
29% identity, 89% coverage: 17:209/216 of query aligns to 17:191/225 of 4ysbA
3r2uB 2.1 angstrom resolution crystal structure of metallo-beta-lactamase from staphylococcus aureus subsp. Aureus col
27% identity, 90% coverage: 11:205/216 of query aligns to 15:210/336 of 3r2uB
Sites not aligning to the query:
3tp9A Crystal structure of alicyclobacillus acidocaldarius protein with beta-lactamase and rhodanese domains
28% identity, 83% coverage: 21:200/216 of query aligns to 23:206/473 of 3tp9A
2q42A Ensemble refinement of the protein crystal structure of glyoxalase ii from arabidopsis thaliana gene at2g31350 (see paper)
28% identity, 89% coverage: 1:192/216 of query aligns to 1:169/254 of 2q42A
O24496 Hydroxyacylglutathione hydrolase cytoplasmic; Glyoxalase II; Glx II; EC 3.1.2.6 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
26% identity, 89% coverage: 1:192/216 of query aligns to 1:174/258 of O24496
Sites not aligning to the query:
Q9SID3 Hydroxyacylglutathione hydrolase 2, mitochondrial; Glyoxalase II; Glx II; EC 3.1.2.6 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
27% identity, 89% coverage: 1:192/216 of query aligns to 71:239/324 of Q9SID3
4ad9A Crystal structure of human lactb2. (see paper)
26% identity, 83% coverage: 17:195/216 of query aligns to 43:202/288 of 4ad9A
Q53H82 Endoribonuclease LACTB2; Beta-lactamase-like protein 2; EC 3.1.27.- from Homo sapiens (Human) (see paper)
26% identity, 83% coverage: 17:195/216 of query aligns to 43:202/288 of Q53H82
Sites not aligning to the query:
3r2uA 2.1 angstrom resolution crystal structure of metallo-beta-lactamase from staphylococcus aureus subsp. Aureus col
25% identity, 90% coverage: 11:205/216 of query aligns to 13:222/348 of 3r2uA
>RR42_RS19750 FitnessBrowser__Cup4G11:RR42_RS19750
MQVLLIPVTPFQQNCALLIDETTGRAAVTDPGGDLDRIHAAVKEHGVTLEKIFLTHGHVD
HCAGAASLARELGIPIEGPHEDERFWIEQLPEQTRRFGFGHAEIFEPQRWLDTGDTVQFG
SETLEVYHCPGHTPGHVVFFSRANRLAIVGDVLFAGSIGRTDFPRGNHADLIRSIRTHLW
PLGEDVTFVPGHGPVSTFGEERKHNPYVADHLIDVA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory