SitesBLAST
Comparing RR42_RS25210 FitnessBrowser__Cup4G11:RR42_RS25210 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
P09110 3-ketoacyl-CoA thiolase, peroxisomal; Acetyl-CoA C-myristoyltransferase; Acetyl-CoA acyltransferase; Beta-ketothiolase; Peroxisomal 3-oxoacyl-CoA thiolase; EC 2.3.1.16; EC 2.3.1.155; EC 2.3.1.9 from Homo sapiens (Human) (see 3 papers)
42% identity, 99% coverage: 3:392/394 of query aligns to 37:420/424 of P09110
- V387 (= V360) to A: in dbSNP:rs2229528
Sites not aligning to the query:
- 1:26 PTS2-type peroxisomal targeting signal
- 5 mutation Q->D,K,L: Does not affect localization to peroxisomes.
- 6 V→D: Abolished localization to peroxisomes.; V→K: Does not affect localization to peroxisomes.
- 7 mutation V->D,K: Abolished localization to peroxisomes.
- 8 mutation L->D,K: Does not affect localization to peroxisomes.
- 9 mutation G->D,R,L: Does not affect localization to peroxisomes.
- 10 H→E: In S3E mutant; Abolished localization to peroxisomes.
2vu2A Biosynthetic thiolase from z. Ramigera. Complex with s-pantetheine-11- pivalate. (see paper)
40% identity, 98% coverage: 5:392/394 of query aligns to 3:387/389 of 2vu2A
- active site: C86 (= C90), H345 (= H350), C375 (= C380), G377 (= G382)
- binding (3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-({3-oxo-3-[(2-sulfanylethyl)amino]propyl}amino)butyl 2,2-dimethylpropanoate: H153 (≠ P149), M154 (= M150), F232 (≠ I238), S244 (= S249), G245 (≠ Q250), F316 (= F321), H345 (= H350)
1dm3A Acetylated biosynthetic thiolase from zoogloea ramigera in complex with acetyl-coa (see paper)
40% identity, 98% coverage: 5:392/394 of query aligns to 3:387/389 of 1dm3A
- active site: C86 (= C90), H345 (= H350), C375 (= C380), G377 (= G382)
- binding acetyl coenzyme *a: C86 (= C90), L145 (≠ V143), H153 (≠ P149), M154 (= M150), R217 (= R223), S224 (≠ G230), M225 (≠ L231), A240 (≠ G245), S244 (= S249), M285 (= M290), A315 (= A320), F316 (= F321), H345 (= H350), C375 (= C380)
1dlvA Biosynthetic thiolase from zoogloea ramigera in complex with coa (see paper)
40% identity, 98% coverage: 5:392/394 of query aligns to 3:387/389 of 1dlvA
- active site: C86 (= C90), H345 (= H350), C375 (= C380), G377 (= G382)
- binding coenzyme a: C86 (= C90), L145 (≠ V143), H153 (≠ P149), M154 (= M150), R217 (= R223), L228 (= L234), A240 (≠ G245), S244 (= S249), H345 (= H350)
2vu1A Biosynthetic thiolase from z. Ramigera. Complex of with o-pantheteine- 11-pivalate. (see paper)
40% identity, 98% coverage: 5:392/394 of query aligns to 5:389/391 of 2vu1A
1ou6A Biosynthetic thiolase from zoogloea ramigera in complex with acetyl-o- pantetheine-11-pivalate
40% identity, 98% coverage: 5:392/394 of query aligns to 6:390/392 of 1ou6A
- active site: C89 (= C90), H348 (= H350), C378 (= C380), G380 (= G382)
- binding pantothenyl-aminoethanol-acetate pivalic acid: L148 (≠ V143), H156 (≠ P149), M157 (= M150), F235 (≠ I238), A243 (≠ G245), S247 (= S249), A318 (= A320), F319 (= F321), H348 (= H350)
P07097 Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; Beta-ketothiolase; EC 2.3.1.9 from Shinella zoogloeoides (Crabtreella saccharophila) (see 2 papers)
39% identity, 99% coverage: 4:392/394 of query aligns to 5:390/392 of P07097
- Q64 (≠ M65) mutation to A: Slightly lower activity.
- C89 (= C90) mutation to A: Loss of activity.
- C378 (= C380) mutation to G: Loss of activity.
2wkuA Biosynthetic thiolase from z. Ramigera. The n316h mutant. (see paper)
40% identity, 98% coverage: 5:392/394 of query aligns to 3:387/389 of 2wkuA
- active site: C86 (= C90), H345 (= H350), C375 (= C380), G377 (= G382)
- binding D-mannose: S6 (= S8), A7 (≠ T9), R38 (= R41), K182 (≠ R178), D194 (≠ A190), V280 (≠ C285), D281 (≠ A286), T287 (≠ I292), P331 (= P336), S332 (≠ D337), V334 (≠ L339), V336 (= V341), F360 (≠ I365)
1m1oA Crystal structure of biosynthetic thiolase, c89a mutant, complexed with acetoacetyl-coa (see paper)
40% identity, 98% coverage: 5:392/394 of query aligns to 4:388/390 of 1m1oA
- active site: A87 (≠ C90), H346 (= H350), C376 (= C380), G378 (= G382)
- binding acetoacetyl-coenzyme a: L86 (≠ Q89), A87 (≠ C90), L146 (≠ V143), H154 (≠ P149), M155 (= M150), R218 (= R223), S225 (≠ G230), M226 (≠ L231), A241 (≠ G245), G242 (= G246), S245 (= S249), A316 (= A320), F317 (= F321), H346 (= H350), I377 (≠ V381), G378 (= G382)
P14611 Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; Beta-ketothiolase; EC 2.3.1.9 from Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) (Ralstonia eutropha) (see paper)
39% identity, 98% coverage: 1:388/394 of query aligns to 1:387/393 of P14611
- C88 (= C90) active site, Acyl-thioester intermediate; mutation to S: Almost complete loss of acetoacetyl-CoA thiolase activity.
- H156 (≠ P149) mutation to A: Almost complete loss of acetoacetyl-CoA thiolase activity.
- F219 (≠ G221) mutation to A: About 50% loss of acetoacetyl-CoA thiolase activity.; mutation to Y: 2-fold increase of acetoacetyl-CoA thiolase activity.
- R221 (= R223) mutation to A: Almost complete loss of acetoacetyl-CoA thiolase activity.
- S248 (= S249) mutation to A: About 40% loss of acetoacetyl-CoA thiolase activity.
- H349 (= H350) mutation to A: Almost complete loss of acetoacetyl-CoA thiolase activity.
- C379 (= C380) mutation to S: Almost complete loss of acetoacetyl-CoA thiolase activity.
2d3tC Fatty acid beta-oxidation multienzyme complex from pseudomonas fragi, form v (see paper)
37% identity, 99% coverage: 2:392/394 of query aligns to 5:388/390 of 2d3tC
- active site: C94 (= C90), H346 (= H350), C376 (= C380), G378 (= G382)
- binding acetyl coenzyme *a: C94 (= C90), R214 (= R223), L222 (= L231), L225 (= L234), A238 (≠ G245), G239 (= G246), S242 (= S249), I244 (≠ L251), A313 (= A320), F314 (= F321), H346 (= H350), C376 (= C380)
7ei4A Crystal structure of masl in complex with a novel covalent inhibitor, collimonin c (see paper)
42% identity, 99% coverage: 3:392/394 of query aligns to 3:388/392 of 7ei4A
4o9cC Crystal structure of beta-ketothiolase (phaa) from ralstonia eutropha h16 (see paper)
39% identity, 98% coverage: 1:388/394 of query aligns to 1:387/393 of 4o9cC
- active site: S88 (≠ C90), H349 (= H350), C379 (= C380), G381 (= G382)
- binding coenzyme a: S88 (≠ C90), L148 (≠ V143), R221 (= R223), F236 (≠ I238), A244 (≠ G245), S248 (= S249), L250 (= L251), A319 (= A320), F320 (= F321), H349 (= H350)
7feaB Py14 in complex with col-d (see paper)
42% identity, 99% coverage: 3:392/394 of query aligns to 4:391/396 of 7feaB
5f38B X-ray crystal structure of a thiolase from escherichia coli at 1.8 a resolution (see paper)
38% identity, 99% coverage: 1:392/394 of query aligns to 1:389/391 of 5f38B
- active site: C88 (= C90), H347 (= H350), C377 (= C380), G379 (= G382)
- binding coenzyme a: C88 (= C90), L149 (vs. gap), K219 (≠ R223), F234 (≠ I238), A242 (≠ G245), S246 (= S249), A317 (= A320), F318 (= F321), H347 (= H350)
5f38D X-ray crystal structure of a thiolase from escherichia coli at 1.8 a resolution (see paper)
38% identity, 99% coverage: 1:392/394 of query aligns to 3:393/394 of 5f38D
- active site: C90 (= C90), A348 (≠ S347), A378 (≠ V377), L380 (≠ M379)
- binding [(3~{S})-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-(2-sulfanylethylamino)propyl]amino]butyl] phosphono hydrogen phosphate: C90 (= C90), L151 (vs. gap), A246 (≠ G245), S250 (= S249), I252 (≠ L251), A321 (= A320), F322 (= F321), H351 (= H350)
7cw5B Acetyl-coa acetyltransferase from bacillus cereus atcc 14579 (see paper)
37% identity, 99% coverage: 3:393/394 of query aligns to 2:391/394 of 7cw5B
- active site: C87 (= C90), H348 (= H350), C378 (= C380), G380 (= G382)
- binding coenzyme a: L147 (≠ Y147), H155 (≠ E155), M156 (≠ L156), R220 (= R223), T223 (= T226), A243 (≠ G245), P247 (≠ S249), L249 (= L251), H348 (= H350)
5bz4K Crystal structure of a t1-like thiolase (coa-complex) from mycobacterium smegmatis (see paper)
39% identity, 99% coverage: 2:392/394 of query aligns to 1:396/400 of 5bz4K
- active site: C87 (= C90), H354 (= H350), C384 (= C380), G386 (= G382)
- binding coenzyme a: C87 (= C90), R146 (vs. gap), M160 (= M150), R220 (= R223), A246 (≠ G245), G247 (= G246), S250 (= S249), Q252 (≠ L251), M291 (= M290), A321 (= A320), F322 (= F321), H354 (= H350)
P45359 Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; CaTHL; EC 2.3.1.9 from Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (see paper)
36% identity, 99% coverage: 1:392/394 of query aligns to 1:390/392 of P45359
- V77 (= V79) mutation to Q: 3-fold increase in thiolase activity, prevents disulfide bond formation under oxidized condition and results in the loss of regulatory mechanism based on redox-switch modulation; when associated with Y-153 and K-286.
- C88 (= C90) modified: Disulfide link with 378, In inhibited form
- S96 (≠ A98) binding
- N153 (≠ P144) mutation to Y: 3-fold increase in thiolase activity, prevents disulfide bond formation under oxidized condition and results in the loss of regulatory mechanism based on redox-switch modulation; when associated with Q-77 and K-286.
- GS 279:280 (≠ AV 281:282) binding
- A286 (≠ E288) mutation to K: 3-fold increase in thiolase activity, prevents disulfide bond formation under oxidized condition and results in the loss of regulatory mechanism based on redox-switch modulation; when associated with Q-77 and Y-153.
- C378 (= C380) modified: Disulfide link with 88, In inhibited form
- A386 (= A388) binding
8oqlC Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-1
37% identity, 99% coverage: 3:392/394 of query aligns to 3:395/397 of 8oqlC
Query Sequence
>RR42_RS25210 FitnessBrowser__Cup4G11:RR42_RS25210
MREAVIVSTARTGIGRAYKGSLNHTKSPTLMGHVISHAVQRAGIAAEEIEDVVIGTSMPG
GTAGMNIGRLSALAGGLPVNVAGQSIDRQCASGLMAMATAAKQIIVDEMDVVVAGGQESI
SLVQDRFVEWMTSAADSELIERVPHAYMPMLQTAELVARRYGISREAQDTYAAESQRRTA
LAQEEGRFAAEIVPFQTSMAIQDRETGEISFRDVLLDRDEGNRPDTTVEGLAKLRTVIDG
GVVTGGNASQLSDGASASVLMDRRLAERRGLQPLGIYRGIAVAGCAPEEMGIGPVFAIPK
LLERHGLKVSDIGLWELNEAFACQVLYCRDRLGIDPDRLNVNGGGISIGHPYGMTGARLV
GHALIEGKRRGEKYVVVTMCVGGGMGAAGLFEVA
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory