SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS27250 FitnessBrowser__Cup4G11:RR42_RS27250 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

A0A0H2VG78 Glucose transporter GlcP; Glucose/H(+) symporter from Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) (see paper)
23% identity, 82% coverage: 41:389/428 of query aligns to 34:398/446 of A0A0H2VG78

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A0A0H2VG78
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Sites not aligning to the query:

Query Sequence

>RR42_RS27250 FitnessBrowser__Cup4G11:RR42_RS27250
MAGAAVPGSSKLGAVLRVTSGNFLEQFDFFLFGFYATYIAHTFFPSNSEFASLMLTFAVF
GAGFLMRPLGAILLGAYIDEVGRRKGLIVTLSLMASGTILIALVPGYASIGVLAPVLVLI
GRLLQGFSAGAELGGVSVYLAEMATPGHKGFYTAWQSASQQIAIVVAAGLGFGLNYWLTT
DELGAWGWRIPFFIGCLIVPFLFVLRRSLQETEAFRTRRHHPSTREVFDSMLGNWRTVLA
GMLLVAMTTTTFYLITVYTPTFGKTVLKLSTADSLGVTLCVGISNFIWLPIGGALSDRIG
RRPILLAISAIALVTAYPALSWLAGAPSFGRMLIVLLWLSFLFGMYNGAMVVALTEVMPV
EVRVAGFSLAYSLATAVFGGFTPAVSTYLIEVTGDKAAPGYWMSFAAACGLLATLILYRK
ARPVAPEF

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory