Comparing RR42_RS28475 FitnessBrowser__Cup4G11:RR42_RS28475 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
4qhqA The structure of a nutrient binding protein from burkholderia cenocepacia bound to methionine
64% identity, 90% coverage: 28:267/267 of query aligns to 1:241/241 of 4qhqA
3tqwA Structure of a abc transporter, periplasmic substrate-binding protein from coxiella burnetii (see paper)
52% identity, 90% coverage: 28:266/267 of query aligns to 1:235/235 of 3tqwA
4yahX Crystal structure of the methionine binding protein, metq (see paper)
51% identity, 88% coverage: 29:262/267 of query aligns to 5:238/245 of 4yahX
3k2dA Crystal structure of immunogenic lipoprotein a from vibrio vulnificus (see paper)
47% identity, 86% coverage: 22:251/267 of query aligns to 1:228/237 of 3k2dA
P04846 Lipoprotein 28 from Escherichia coli (strain K12) (see paper)
45% identity, 90% coverage: 29:267/267 of query aligns to 34:272/272 of P04846
Sites not aligning to the query:
4ib2A Crystal structure of a putative lipoprotein (rumgna_00858) from ruminococcus gnavus atcc 29149 at 1.76 a resolution
36% identity, 90% coverage: 27:265/267 of query aligns to 6:245/247 of 4ib2A
4oteB Crystal structure of a putative lipoprotein (cd630_1653) from clostridium difficile 630 at 2.20 a resolution
37% identity, 91% coverage: 26:267/267 of query aligns to 3:240/240 of 4oteB
6dzxA Crystal structure of the n. Meningitides methionine-binding protein in its d-methionine bound conformation. (see paper)
38% identity, 84% coverage: 43:266/267 of query aligns to 17:236/240 of 6dzxA
3gxaC Crystal structure of gna1946 (see paper)
38% identity, 84% coverage: 43:266/267 of query aligns to 18:237/244 of 3gxaC
1p99A 1.7a crystal structure of protein pg110 from staphylococcus aureus (see paper)
41% identity, 89% coverage: 29:265/267 of query aligns to 2:239/255 of 1p99A
1xs5A The crystal structure of lipoprotein tp32 from treponema pallidum (see paper)
33% identity, 90% coverage: 26:266/267 of query aligns to 2:240/240 of 1xs5A
4ntlA Crystal structure of a lipoprotein, yaec family (ef3198) from enterococcus faecalis v583 at 1.80 a resolution
35% identity, 85% coverage: 41:267/267 of query aligns to 16:242/242 of 4ntlA
Sites not aligning to the query:
6jf1A Crystal structure of the substrate binding protein of a methionine transporter from streptococcus pneumoniae (see paper)
29% identity, 90% coverage: 28:267/267 of query aligns to 12:260/260 of 6jf1A
Sites not aligning to the query:
>RR42_RS28475 FitnessBrowser__Cup4G11:RR42_RS28475
MQRRSLFESIALAAAMIVLPAAHAADQVVRLGTMSGPDAQIWEVVRTVAKRSGLDVKIIE
FNDYAQPNAALDAGDLDANSFQHQPFLDSQIEARHYKIANVGLTYVAPMGFYSKKLKSLK
ALPDGAKVGIQNDPSNGNRALLLLQKEGLVTLRDGAGKNGKNATPLDIKANPRKLKIVEL
DSAILPRSLDDLAVASINTDYAVKAGLSPAQDAIATEDLRGPYANLIAVRTQDKDKPWVK
PLVAAYQSQEVREFLATQFKGAILPAF
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory