SitesBLAST – Find functional sites

 

SitesBLAST

Comparing RR42_RS31740 FitnessBrowser__Cup4G11:RR42_RS31740 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
43% identity, 97% coverage: 1:216/222 of query aligns to 1:215/215 of 4ymtC

query
sites
4ymtC
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I
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K
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L
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-
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A
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S
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E
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M
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M
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A
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R
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E
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
43% identity, 97% coverage: 1:215/222 of query aligns to 1:214/214 of 4ymwC

query
sites
4ymwC
M
 
M
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L

Query Sequence

>RR42_RS31740 FitnessBrowser__Cup4G11:RR42_RS31740
MELDFSPVWAGWPDLVRGAGVTVEVTACALVLGCVMGLLVGIGRLDPRRRVVYGLCTAYV
TAIRGTPLLVQLFLLFFGLPQFDILLPAFVCGVIGLGIYSGAYVSEIVRGAIQSVDKGQM
EAARSIGMSSGQAMRAVILPQAIVRMIPPLGNEFIALIKNSALVSLLTIHDVMHEGQKII
SVSYRSLEVYLAIALVYLLLTSAAGLFLRHMEQRLRMGGMVQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory