Comparing RR42_RS33500 FitnessBrowser__Cup4G11:RR42_RS33500 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1cjxA Crystal structure of pseudomonas fluorescens hppd (see paper)
77% identity, 98% coverage: 5:355/357 of query aligns to 1:351/352 of 1cjxA
7xntA Crystal structure of pfhppd-y13161 complex
77% identity, 97% coverage: 2:349/357 of query aligns to 1:341/341 of 7xntA
7x8eA Crystal structure of pfhppd-y13287 complex
75% identity, 98% coverage: 3:353/357 of query aligns to 1:341/341 of 7x8eA
7xntC Crystal structure of pfhppd-y13161 complex
73% identity, 96% coverage: 3:344/357 of query aligns to 1:320/320 of 7xntC
Q88JU3 3-dehydroshikimate dehydratase; DSD; EC 4.2.1.118 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see paper)
34% identity, 94% coverage: 13:347/357 of query aligns to 295:624/635 of Q88JU3
Sites not aligning to the query:
5hmqD Xylose isomerase-like tim barrel/4-hydroxyphenylpyruvate dioxygenase fusion protein
34% identity, 94% coverage: 13:347/357 of query aligns to 297:621/624 of 5hmqD
Sites not aligning to the query:
1t47A Structure of fe2-hppd bound to ntbc (see paper)
33% identity, 96% coverage: 7:349/357 of query aligns to 1:360/362 of 1t47A
7yvvA Acmp1, r-4-hydroxymandelate synthase
30% identity, 83% coverage: 54:349/357 of query aligns to 48:334/335 of 7yvvA
3zgjB S221m v223f y359a mutant of 4-hydroxymandelate synthase from streptomyces coelicolor (see paper)
28% identity, 90% coverage: 30:349/357 of query aligns to 23:342/343 of 3zgjB
O52791 4-hydroxymandelate synthase; HMS; HmaS; 4-hydroxyphenylpyruvate dioxygenase II; EC 1.13.11.46 from Amycolatopsis orientalis (Nocardia orientalis) (see paper)
31% identity, 89% coverage: 31:346/357 of query aligns to 29:343/357 of O52791
2r5vA Hydroxymandelate synthase crystal structure (see paper)
31% identity, 89% coverage: 31:346/357 of query aligns to 28:341/346 of 2r5vA
Q02110 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvic acid oxidase; 4HPPD; HPD; HPPDase; EC 1.13.11.27 from Sus scrofa (Pig) (see paper)
35% identity, 56% coverage: 155:355/357 of query aligns to 176:381/393 of Q02110
Sites not aligning to the query:
5ec3A Structural insight into the catalyitc mechanism of human 4- hydroxyphenylpyruvate dioxygenase
27% identity, 87% coverage: 44:355/357 of query aligns to 46:373/376 of 5ec3A
P32755 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvic acid oxidase; 4HPPD; HPD; HPPDase; F Alloantigen; F protein; EC 1.13.11.27 from Rattus norvegicus (Rat) (see 2 papers)
27% identity, 87% coverage: 44:355/357 of query aligns to 54:381/393 of P32755
Sites not aligning to the query:
8im2A Crystal structure of human hppd complexed with ntbc (see paper)
27% identity, 87% coverage: 44:354/357 of query aligns to 48:374/374 of 8im2A
8im3A Crystal structure of human hppd complexed with compound a10 (see paper)
27% identity, 86% coverage: 44:349/357 of query aligns to 48:369/371 of 8im3A
7x8iA Crystal structure of athppd-shikonin complex (see paper)
28% identity, 79% coverage: 64:346/357 of query aligns to 91:376/380 of 7x8iA
7x64A Crystal structure of athppd-y18027 complex (see paper)
28% identity, 79% coverage: 64:346/357 of query aligns to 91:376/380 of 7x64A
7x5sA Crystal structure of athppd-y14157 complex
28% identity, 79% coverage: 64:346/357 of query aligns to 91:376/380 of 7x5sA
7ezqA Complex structure of athppd with inhibitor y15832
28% identity, 79% coverage: 64:346/357 of query aligns to 91:376/382 of 7ezqA
>RR42_RS33500 FitnessBrowser__Cup4G11:RR42_RS33500
MADLFENPMQLMGFEFVEFASPTPNLLEPIFEQMGFTLVARHRSKDVVLYRQGDINFIVN
REPHSPAAYFAAEHGPSACGMAFRVKDSHKAYARALELGAQPVEIATGPMELRLPAIKGI
GGAPLYLIDRFEEGKSIYDIDFEFIDGVDRHPVGLGLRLIDHLTHNVYRGRMAYWANFYE
KLFNFREIRYFDIQGEYTGLTSKAMTAPDGKIRIPLNEESSKGSGQIEEFLMAFNGEGIQ
HIAFLTDNLIEVIDSLQMAGVPLMTAPNDYYYDGLEARLPGHGQPVDQLKARGILVDGTT
EGGKPRLLLQIFSKASLGPVFFEFIQRKGDEGFGEGNFKALFESLERDQIERGTLKV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory