Comparing RR42_RS33670 FitnessBrowser__Cup4G11:RR42_RS33670 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
A0A0H2ZQB9 Ergothioneine transporter EgtUBC from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
24% identity, 49% coverage: 139:282/291 of query aligns to 61:203/506 of A0A0H2ZQB9
Sites not aligning to the query:
B5Z7I3 Ergothioneine transport permease/ergothioneine binding protein EgtU from Helicobacter pylori (strain G27) (see paper)
30% identity, 40% coverage: 110:224/291 of query aligns to 70:184/553 of B5Z7I3
Sites not aligning to the query:
>RR42_RS33670 FitnessBrowser__Cup4G11:RR42_RS33670
MSASAQRLEPAPGTAAVAAKPPARRMKAVSGYRLPGEGSSSRISTITVVSLLALWWIGSH
LRWLPPLFLPTPEAIINAFIDAWNGNVQGGLPLTEHFRASMVRVFGAFALATVTAVPIGV
MMGVSRIARGVFDPPIEFYRPLPPLAYLPLIVIWFGIDETSKILLIFLACFAPLAMSAQA
GVRSVTIEQINAAYSMGANRWQVIRHVVIPAALPDILTGMRIAIGFGWTTLVAAEMVAAT
SGLGQMVLNASNFLRTDVVIMGIGLIGLIAYTFDLLMRKTEKWLVPWKGRM
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory