Comparing RR42_RS34305 FitnessBrowser__Cup4G11:RR42_RS34305 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
59% identity, 96% coverage: 1:241/252 of query aligns to 2:241/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
58% identity, 95% coverage: 1:240/252 of query aligns to 3:242/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
58% identity, 95% coverage: 1:240/252 of query aligns to 3:242/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
58% identity, 95% coverage: 1:240/252 of query aligns to 3:242/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
58% identity, 95% coverage: 1:240/252 of query aligns to 3:242/242 of 2oljA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
56% identity, 95% coverage: 1:240/252 of query aligns to 1:240/240 of 4ymuJ
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
54% identity, 96% coverage: 2:242/252 of query aligns to 3:255/258 of 1b0uA
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
54% identity, 94% coverage: 2:237/252 of query aligns to 7:254/258 of P02915
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
38% identity, 96% coverage: 1:241/252 of query aligns to 1:246/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
38% identity, 96% coverage: 1:241/252 of query aligns to 2:247/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
38% identity, 96% coverage: 1:241/252 of query aligns to 2:247/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
38% identity, 96% coverage: 1:241/252 of query aligns to 2:247/344 of 3tuiC
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
40% identity, 90% coverage: 1:226/252 of query aligns to 3:232/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
40% identity, 90% coverage: 1:226/252 of query aligns to 3:232/592 of 5lj7A
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
35% identity, 93% coverage: 2:236/252 of query aligns to 11:252/257 of P0AAH0
Sites not aligning to the query:
8igqA Cryo-em structure of mycobacterium tuberculosis adp bound ftsex/ripc complex in peptidisc (see paper)
38% identity, 86% coverage: 1:217/252 of query aligns to 2:220/227 of 8igqA
8iddA Cryo-em structure of mycobacterium tuberculosis atp bound ftsex/ripc complex in peptidisc (see paper)
38% identity, 86% coverage: 1:217/252 of query aligns to 2:220/225 of 8iddA
A5U7B7 Cell division ATP-binding protein FtsE from Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (see 2 papers)
38% identity, 86% coverage: 1:217/252 of query aligns to 1:219/229 of A5U7B7
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
35% identity, 87% coverage: 5:222/252 of query aligns to 8:225/230 of 6z4wA
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
35% identity, 87% coverage: 5:222/252 of query aligns to 8:225/229 of 6z67B
>RR42_RS34305 FitnessBrowser__Cup4G11:RR42_RS34305
MIRIDNLQKYFDDHHVLRGVSLHVDAGEVVCLIGPSGSGKSTVLRCINGLESYEGGEIRA
FGERVDRGGKDIHRLRSRMGMVFQRFNLFPHRSVLENVMEGPVYVKGESRDKARSEAMEL
LEKVGLAAKAQAYPPQLSGGQQQRVAIARALAMRPEAMLFDEPTSALDPELVGDVLEVMR
NLAREGMTMIVVTHEMGFAREVADRVCFLHSGTIVEEGAAAQVLGAPSHARTQDFLRRVL
HKPVEAAGDPAP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory