Comparing RR42_RS34990 FitnessBrowser__Cup4G11:RR42_RS34990 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
42% identity, 99% coverage: 1:464/467 of query aligns to 1:422/427 of 8b01B
>RR42_RS34990 FitnessBrowser__Cup4G11:RR42_RS34990
MWILIVSFLLLMLVGLPVAIAMAVASLLYIWASGTVPDVILAQRMIAGVESFPLLAVPFF
ILAGNLMNVAGITGRIYNFAVALVGWMRGGLGHVNIIGSVIFSGMSGTAIADAAGLGTIE
IKAMQDHGYETEFAVGVTAASATLGPIIPPSLPFVIYGMMANVSIGSLFLAGIVPGLVLT
LFMMGTVAWFAHRRGWGSDTAFSWKLLGNASIEIAVVLAFPLAIWLMTRFGVSTNVAALI
ALVVLLALDWYFDFSAVMALMAPVILIGGMTLGWFTPTEAAVAAVIWALFLGLVRYRSMT
LRSLAKATLDTIETTASVLFIVTAASIFAWLLTTSQAAQMLSDAILGFTHNKWVFLLLAN
VLILIVGCFIDTTAAITILVPILLPIVLKLGIDPIHFGLVMTLNLMIGLLHPPLGMVLFV
LARVAKLSVERTTVAILPWLVPLFLTLIAITYFPAITLWLPNLVGSK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory