Comparing RR42_RS35125 FitnessBrowser__Cup4G11:RR42_RS35125 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
3pm5A Crystal structure of boxb in mixed valent state with bound benzoyl-coa (see paper)
73% identity, 99% coverage: 5:475/475 of query aligns to 1:471/472 of 3pm5A
3perA Crystal structure of boxb with phosphate bound to the diiron center (see paper)
73% identity, 99% coverage: 7:475/475 of query aligns to 1:469/477 of 3perA
>RR42_RS35125 FitnessBrowser__Cup4G11:RR42_RS35125
MSSINYSDKIPNNVNLSEDRTLQRALEQWQPNYLSWWNDMGPDGSQDFDIYLRTAISVDP
QGWAHFGHVKMPDYRWGIFLNPAEANRKIHFGDHKGEDAWQDVPGEYRANLRRIIVTQGD
TEPASVEQQRHLGLTAPSMYDLRNLFQVNVEEGRHLWAMVYLLHKYFGRDGREEGEALLE
RRSGQQDNPRILQAFNEQTPDWLSFFMFTYFTDRDGKFQLCALAESSFDPLARTTKFMLT
EEAHHMFVGESGVSRVIQRTCQVMNELKTDDPARLRAAGVIDLPTIQRYLNFHYSVTIDL
FGADESSNAATFYSTGLKGRYEEGKRADDHVLKGQTYKVLQASGGQLIEKEVPMLNALNE
VLRDDYIKDSVAGVERWNRVIDKAGIPVRLKVPHKAFHRNIGALSGVKISPDGRVISDAE
WKANVDQWLPSETDRAYVASLMGRVVEPGKFAGWIAPPVMGINRQPVDFEYVRFN
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory