Comparing RR42_RS35925 FitnessBrowser__Cup4G11:RR42_RS35925 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 10 hits to proteins with known functional sites (download)
Q29551 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial; SCOT; 3-oxoacid CoA-transferase 1; Somatic-type succinyl-CoA:3-oxoacid CoA-transferase; SCOT-s; Succinate-coenzyme A transferase; Succinyl-CoA:3-oxoacid CoA transferase; EC 2.8.3.5 from Sus scrofa (Pig) (see 3 papers)
44% identity, 93% coverage: 7:218/227 of query aligns to 45:271/520 of Q29551
Sites not aligning to the query:
3oxoE Succinyl-coa:3-ketoacid coa transferase from pig heart covalently bound to coa (see paper)
44% identity, 93% coverage: 7:218/227 of query aligns to 6:232/462 of 3oxoE
Sites not aligning to the query:
3k6mC Dynamic domains of succinyl-coa:3-ketoacid-coenzyme a transferase from pig heart. (see paper)
44% identity, 93% coverage: 7:218/227 of query aligns to 6:232/466 of 3k6mC
Sites not aligning to the query:
1o9lA Succinate:coenzyme-a transferase (pig heart)
44% identity, 93% coverage: 7:218/227 of query aligns to 6:232/468 of 1o9lA
1k6dB Crystal structure of acetate coa-transferase alpha subunit (see paper)
43% identity, 96% coverage: 1:217/227 of query aligns to 1:214/219 of 1k6dB
8i3yA Crystal structure of asct from trypanosoma brucei in complex with succinyl-coa.
39% identity, 93% coverage: 8:217/227 of query aligns to 7:232/459 of 8i3yA
Sites not aligning to the query:
8i40A Crystal structure of asct from trypanosoma brucei in complex with coa.
39% identity, 93% coverage: 8:217/227 of query aligns to 7:232/467 of 8i40A
Sites not aligning to the query:
8i3yD Crystal structure of asct from trypanosoma brucei in complex with succinyl-coa.
39% identity, 93% coverage: 8:217/227 of query aligns to 7:232/471 of 8i3yD
Q0S7P9 Cholesterol ring-cleaving hydrolase IpdA subunit; (3E)-2-(2-carboxylatoethyl)-3-methyl-6-oxocyclohex-1-ene-1-carboxyl-CoA hydrolase alpha subunit; COCHEA-CoA hydrolase alpha subunit; EC 4.1.99.- from Rhodococcus jostii (strain RHA1) (see paper)
27% identity, 96% coverage: 8:225/227 of query aligns to 10:236/296 of Q0S7P9
6co9A Crystal structure of rhodococcus jostii rha1 ipdab cochea-coa complex (see paper)
27% identity, 96% coverage: 8:225/227 of query aligns to 9:235/295 of 6co9A
>RR42_RS35925 FitnessBrowser__Cup4G11:RR42_RS35925
MINKLFDSVESAMADIQDGATILIGGFGMAGMPAELIDALIAQGARDLTIVNNNAGNGDT
GLAALLKTERVRKIICSFPRQADSYVFDSLYHAGKIELELVPQGNLAERIRAAGAGIGGF
FTRTAYGTPLAEGKETRIIDGQGYVYETPIHADFALIKALRADRWGNLTYRKTARNFGPI
MAMAAKCPIVQVSEIVELGELDPEHIVTPGLFVKRVVKVDGASQAAA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory