Comparing SM_b20018 FitnessBrowser__Smeli:SM_b20018 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
34% identity, 64% coverage: 27:242/340 of query aligns to 4:224/287 of 5dteB
Sites not aligning to the query:
4pe6B Crystal structure of abc transporter solute binding protein from thermobispora bispora dsm 43833
29% identity, 91% coverage: 28:338/340 of query aligns to 4:308/324 of 4pe6B
A0QYB3 Xylitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
33% identity, 64% coverage: 20:236/340 of query aligns to 29:242/349 of A0QYB3
Sites not aligning to the query:
5hkoA Crystal structure of abc transporter solute binding protein msmeg_3598 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with l-sorbitol
35% identity, 53% coverage: 57:236/340 of query aligns to 27:209/314 of 5hkoA
Sites not aligning to the query:
4rs3A Crystal structure of carbohydrate transporter a0qyb3 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with xylitol (see paper)
35% identity, 53% coverage: 57:236/340 of query aligns to 27:209/315 of 4rs3A
Sites not aligning to the query:
2x7xA Fructose binding periplasmic domain of hybrid two component system bt1754 (see paper)
29% identity, 64% coverage: 26:242/340 of query aligns to 2:215/301 of 2x7xA
Sites not aligning to the query:
A0QYB5 D-threitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
30% identity, 68% coverage: 6:236/340 of query aligns to 15:242/349 of A0QYB5
Sites not aligning to the query:
3c6qC Apo and ligand-bound form of a thermophilic glucose/xylose binding protein
31% identity, 75% coverage: 30:283/340 of query aligns to 2:254/305 of 3c6qC
2h3hA Crystal structure of the liganded form of thermotoga maritima glucose binding protein (see paper)
31% identity, 75% coverage: 30:283/340 of query aligns to 2:254/313 of 2h3hA
4rsmA Crystal structure of carbohydrate transporter msmeg_3599 from mycobacterium smegmatis str. Mc2 155, target efi-510970, in complex with d-threitol (see paper)
34% identity, 53% coverage: 57:236/340 of query aligns to 28:210/315 of 4rsmA
Sites not aligning to the query:
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
28% identity, 65% coverage: 52:271/340 of query aligns to 22:242/274 of 2ioyA
Sites not aligning to the query:
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
30% identity, 61% coverage: 37:242/340 of query aligns to 17:221/287 of 4yo7A
Sites not aligning to the query:
6hyhA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with beta-d-fucofuranose (see paper)
30% identity, 61% coverage: 28:234/340 of query aligns to 2:213/304 of 6hyhA
Sites not aligning to the query:
6hbmA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with alpha-l-arabinofuranose (see paper)
30% identity, 61% coverage: 28:234/340 of query aligns to 2:213/304 of 6hbmA
Sites not aligning to the query:
6hbdA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with beta-d-galactofuranose (see paper)
30% identity, 59% coverage: 35:234/340 of query aligns to 10:214/305 of 6hbdA
Sites not aligning to the query:
5ocpA The periplasmic binding protein component of the arabinose abc transporter from shewanella sp. Ana-3 bound to alpha and beta-l- arabinofuranose
29% identity, 61% coverage: 28:233/340 of query aligns to 3:210/302 of 5ocpA
Sites not aligning to the query:
1dbpA Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
28% identity, 47% coverage: 75:235/340 of query aligns to 46:207/271 of 1dbpA
Sites not aligning to the query:
4ry9B Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
27% identity, 78% coverage: 26:290/340 of query aligns to 3:273/297 of 4ry9B
4ry9A Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
27% identity, 78% coverage: 26:290/340 of query aligns to 3:273/297 of 4ry9A
P39325 Galactofuranose-binding protein YtfQ from Escherichia coli (strain K12) (see 2 papers)
26% identity, 64% coverage: 26:244/340 of query aligns to 24:247/318 of P39325
Sites not aligning to the query:
>SM_b20018 FitnessBrowser__Smeli:SM_b20018
MKKFFAFALGTVASIVLSASAHAETFKIGLSNGWVGSEWRTQMIDEAKAAAAEWKEKGVD
VEVSVQSANVDVPGQIAHIRNFIAEGVNAIIVNPNSPTAFDPIFAQAKEAGILVIATDAE
VSSPDAIYVGIDQTAWGAAGAKWLAETLGGKGKVVAINGVAGHPANEMRVAGYKSVFKDH
ADIQVVNEVNANWDQAQGQQAMQNILATYPDINGVLVQDGMAAGAWKSIMDAGKAGQIAA
TGEIRKDFIDLWIKEKLNSGATVNPPGVMASALNVAVLMLQGKELKEPAKAGQYGNALYL
PIPFIDSKNVAEAAKQLEGKPGYYSYTSSLSIEEAEALFK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory