Comparing SM_b20036 FitnessBrowser__Smeli:SM_b20036 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
7bcrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with galactonate (see paper)
47% identity, 90% coverage: 27:329/338 of query aligns to 1:303/310 of 7bcrA
7bcpA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with gluconate (see paper)
47% identity, 90% coverage: 27:329/338 of query aligns to 1:303/310 of 7bcpA
7bcoA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with d-foconate (see paper)
47% identity, 90% coverage: 27:329/338 of query aligns to 1:303/310 of 7bcoA
7bcnA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with xylonic acid (see paper)
47% identity, 90% coverage: 27:329/338 of query aligns to 1:303/310 of 7bcnA
7bbrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t (see paper)
47% identity, 90% coverage: 27:329/338 of query aligns to 2:304/310 of 7bbrA
4x8rA Crystal structure of a trap periplasmic solute binding protein from rhodobacter sphaeroides (rsph17029_2138, target efi-510205) with bound glucuronate
39% identity, 84% coverage: 32:316/338 of query aligns to 5:287/304 of 4x8rA
4pddA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_0088, target efi-510167) bound to d- erythronate (see paper)
36% identity, 83% coverage: 48:328/338 of query aligns to 19:297/303 of 4pddA
Sites not aligning to the query:
4n8yA Crystal structure of a trap periplasmic solute binding protein from bradyrhizobium sp. Btai1 b (bbta_0128), target efi-510056 (bbta_0128), complex with alpha/beta-d-galacturonate (see paper)
35% identity, 88% coverage: 36:332/338 of query aligns to 6:297/300 of 4n8yA
4nq8B Crystal structure of a trap periplasmic solute binding protein from bordetella bronchispeptica (bb3421), target efi-510039, with density modeled as pantoate (see paper)
38% identity, 79% coverage: 32:297/338 of query aligns to 3:268/301 of 4nq8B
4xeqB Crystal structure of a trap periplasmic solute binding protein from desulfovibrio vulgaris (deval_0042, target efi-510114) bound to copurified (r)-pantoic acid
34% identity, 90% coverage: 33:337/338 of query aligns to 4:294/304 of 4xeqB
4pdhA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_1871, target efi-510164) bound to d- erythronate (see paper)
34% identity, 88% coverage: 32:328/338 of query aligns to 3:297/301 of 4pdhA
4p9kA Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to d- erythronate with residual density suggestive of superposition with copurified alternative ligand. (see paper)
34% identity, 84% coverage: 45:328/338 of query aligns to 18:299/303 of 4p9kA
4pakA Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to (r)- pantoic acid (see paper)
34% identity, 84% coverage: 45:328/338 of query aligns to 19:300/304 of 4pakA
4pf8A Crystal structure of a trap periplasmic solute binding protein from sulfitobacter sp. Nas-14.1 (target efi-510299) with bound beta-d- galacturonate (see paper)
34% identity, 82% coverage: 43:318/338 of query aligns to 12:285/300 of 4pf8A
Sites not aligning to the query:
4p8bA Crystal structure of a trap periplasmic solute binding protein from ralstonia eutropha h16 (h16_a1328), target efi-510189, with bound (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-acetolactate) (see paper)
34% identity, 83% coverage: 44:325/338 of query aligns to 16:304/314 of 4p8bA
Q128M1 Solute-binding protein Bpro_3107 from Polaromonas sp. (strain JS666 / ATCC BAA-500) (see paper)
33% identity, 85% coverage: 31:316/338 of query aligns to 29:313/330 of Q128M1
4mhfA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp. Js666 (bpro_3107), target efi-510173, with bound alpha/beta d-glucuronate, space group p21 (see paper)
33% identity, 82% coverage: 39:316/338 of query aligns to 10:283/301 of 4mhfA
Sites not aligning to the query:
4mijA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp. Js666 (bpro_3107), target efi-510173, with bound alpha/beta d-galacturonate, space group p21 (see paper)
33% identity, 82% coverage: 39:316/338 of query aligns to 10:283/302 of 4mijA
Sites not aligning to the query:
4ovrA Crystal structure of a trap periplasmic solute binding protein from xanthobacter autotrophicus py2, target efi-510329, with bound beta-d- galacturonate (see paper)
32% identity, 82% coverage: 43:319/338 of query aligns to 13:285/298 of 4ovrA
Sites not aligning to the query:
4x04A Crystal structure of a trap periplasmic solute binding protein from citrobacter koseri (cko_04899, target efi-510094) with bound d- glucuronate
32% identity, 79% coverage: 31:298/338 of query aligns to 2:271/301 of 4x04A
>SM_b20036 FitnessBrowser__Smeli:SM_b20036
MFDRLTKLTLGLAVPLALMTAGPALAEIRDQTVKFASANNKGHPQVTGMEKFAELVKEKS
GGKIEVKLFPGGTLGGDVQTVSALQGGVIEMTVLNAGILASNVKEFGAVDLPFLFDSGEE
ADKVMDGPFGTSLMERLPATGLVGVAYWELGFRNLTNNRHPVTKLEDIKGLKIRTIQSPI
PVELFNALGANAVPLPYTELYTALETGTVDGQENPSANIINAKFYEVQKYMTLTRHQYNP
QIVLVSKKFWDGLNDEEKTVLQQAAVEARDFQRKVSREQDAAALEEIRKTGMEVSELSAE
ETQKLRDAVKPMIEKFSADIGQETVEALFKEIGTARGQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory