SitesBLAST – Find functional sites

 

SitesBLAST

Comparing SM_b20297 SM_b20297 permease to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
63% identity, 98% coverage: 7:423/426 of query aligns to 7:424/427 of 8b01B

query
sites
8b01B
G
 
G
W
 
W
F
 
L
A
 
G
L
 
L
L
 
L
I
 
F
A
 
A
G
 
G
M
 
M
P
 
P
V
 
V
G
 
G
F
 
F
T
 
S
L
 
L
I
 
I
V
 
F
A
 
V
A
 
G
L
 
L
A
 
A
Y
 
F
M
 
L
-
 
V
L
 
L
W
 
T
Q
 
E
G
 
S
T
 
T
G
 
G
L
 
I
N
 
N
F
 
F
A
 
A
G
 
A
Q
 
Q
R
 
Q
M
 
M
I
 
I
A
 
G
G
 
G
L
 
L
N
 
D
S
 
N
F
 
F
P
 
T
L
 
L
L
 
L
A
 
A
V
 
V
P
 
P
F
 
F
F
 
F
I
 
V
L
 
L
T
 
T
A
 
G
Q
 
H
L
 
L
M
 
M
N
 
N
L
 
S
S
 
A
G
 
G
V
 
I
T
 
T
E
 
E
R
 
R
I
 
I
F
 
F
D
 
N
F
 
F
A
 
A
K
 
K
A
 
A
L
 
M
V
 
V
G
 
G
H
 
H
I
 
I
R
 
T
G
 
G
G
 
S
L
 
L
G
 
G
H
 
H
V
 
V
N
 
N
I
 
I
M
 
L
A
 
A
S
 
S
V
 
L
L
 
L
F
 
F
S
|
S
G
 
G
M
 
M
S
|
S
G
|
G
S
 
S
A
 
A
V
 
L
A
 
A
D
 
D
A
 
A
A
 
G
G
 
G
L
 
L
G
 
G
Q
 
Q
L
 
L
E
 
E
I
 
I
K
 
K
A
 
S
M
 
M
R
 
R
D
 
D
A
 
A
G
 
K
Y
 
Y
D
 
D
E
 
D
Q
 
D
F
 
F
S
 
A
G
 
G
S
 
G
I
 
L
T
 
T
A
 
A
A
 
A
S
 
S
A
 
C
I
 
I
I
 
I
G
|
G
P
 
P
L
 
L
I
x
V
P
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P
P
|
P
S
 
S
I
 
I
P
 
P
L
 
L
V
 
V
V
 
I
Y
 
Y
G
 
G
V
 
V
I
 
V
A
 
S
N
 
N
T
 
T
S
 
S
I
 
I
G
 
G
G
 
A
L
 
L
F
 
F
L
 
L
G
 
A
G
 
G
I
 
A
V
 
I
P
 
P
G
 
G
L
 
L
L
 
L
C
 
C
A
 
C
A
 
I
S
 
A
L
 
L
M
 
C
I
 
I
M
 
M
V
 
T
Y
 
Y
V
 
F
I
 
I
A
 
A
W
 
K
R
 
K
R
 
R
N
 
G
Y
 
Y
A
 
M
T
 
T
A
 
L
Q
 
P
R
 
R
A
 
A
G
 
S
F
 
R
R
 
K
R
 
E
V
 
R
W
 
L
S
 
I
T
 
A
F
 
F
W
 
R
H
 
D
A
 
A
L
 
F
L
 
L
P
 
S
L
 
L
I
 
L
T
 
T
P
 
P
F
 
F
I
 
I
I
 
I
I
 
I
G
 
G
G
 
G
I
 
I
F
 
F
A
 
S
G
 
G
V
 
K
F
 
F
S
 
T
P
 
P
T
 
T
E
 
E
A
 
A
A
 
A
V
 
I
V
 
I
A
 
S
A
 
S
S
 
L
Y
 
Y
A
 
A
L
 
L
F
 
F
L
 
L
G
 
G
V
 
T
V
 
V
V
 
V
Y
 
Y
R
 
K
E
 
S
I
 
L
T
 
T
F
 
M
A
 
D
K
 
K
L
 
F
V
 
I
T
 
K
V
 
L
L
 
V
R
 
Q
E
 
E
T
 
T
V
 
V
S
 
T
H
 
T
T
 
T
A
 
S
A
 
V
V
 
V
G
 
A
L
 
L
L
 
M
I
 
V
M
 
M
G
 
G
V
 
V
S
 
T
L
 
V
F
 
F
G
 
G
Y
 
W
V
 
I
I
 
V
A
 
A
R
 
R
E
 
E
Q
 
Q
V
 
L
P
 
P
Q
 
Q
H
 
Q
V
 
L
A
 
A
T
 
E
F
 
L
F
 
F
L
 
L
T
 
S
Y
 
I
A
 
S
E
 
D
D
 
N
P
 
P
L
 
L
T
 
I
F
 
L
L
 
L
I
 
L
L
 
L
V
 
I
N
 
N
L
 
L
M
 
L
L
 
L
L
 
L
A
 
F
L
 
L
G
|
G
T
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T
F
 
F
I
 
I
E
 
E
A
 
S
L
 
L
A
 
A
I
 
L
L
 
L
L
 
L
L
 
L
I
 
L
V
 
V
P
 
P
V
 
F
L
 
L
V
 
V
P
 
P
T
 
V
A
 
A
L
 
T
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S
F
 
V
G
 
G
V
 
I
D
 
D
P
 
P
V
 
V
H
 
H
F
 
F
G
 
G
V
 
V
M
 
M
V
 
A
V
 
I
F
 
L
N
 
N
L
 
L
M
 
M
I
 
I
G
|
G
I
|
I
L
 
L
T
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T
P
 
P
P
 
P
M
|
M
G
|
G
V
 
M
A
 
A
L
 
L
F
 
Y
V
 
V
V
 
V
S
 
S
K
 
K
V
 
V
A
 
G
D
 
N
I
 
I
P
 
P
F
 
F
G
 
H
V
 
V
L
 
L
A
 
T
R
 
R
G
 
G
I
 
V
L
 
L
P
 
P
L
 
L
L
 
L
I
 
V
P
 
P
L
 
L
V
 
F
V
 
I
V
 
V
L
 
L
V
 
G
L
 
L
I
 
I
T
 
I
I
 
V
F
 
F
P
 
P
A
 
Q
L
 
I
V
 
T
T
 
L
F
 
F
I
 
L
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P
D
 
Q
Q
 
L
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V
L
 
L
G
 
G

Query Sequence

>SM_b20297 SM_b20297 permease
MATLFGGWFALLIAGMPVGFTLIVAALAYMLWQGTGLNFAGQRMIAGLNSFPLLAVPFFI
LTAQLMNLSGVTERIFDFAKALVGHIRGGLGHVNIMASVLFSGMSGSAVADAAGLGQLEI
KAMRDAGYDEQFSGSITAASAIIGPLIPPSIPLVVYGVIANTSIGGLFLGGIVPGLLCAA
SLMIMVYVIAWRRNYATAQRAGFRRVWSTFWHALLPLITPFIIIGGIFAGVFSPTEAAVV
AASYALFLGVVVYREITFAKLVTVLRETVSHTAAVGLLIMGVSLFGYVIAREQVPQHVAT
FFLTYAEDPLTFLILVNLMLLALGTFIEALAILLLIVPVLVPTALQFGVDPVHFGVMVVF
NLMIGILTPPMGVALFVVSKVADIPFGVLARGILPLLIPLVVVLVLITIFPALVTFIPDQ
MLGAAR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory