Comparing SM_b20321 SM_b20321 hypothetical protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
35% identity, 90% coverage: 6:383/421 of query aligns to 7:382/427 of 8b01B
>SM_b20321 SM_b20321 hypothetical protein
MVTTAAFLAFMLVGVPIGVCLCLGSIVYIFASGNPLLFQSFPTQLFGGVDNYGLISIPLF
VLIGEIMNGGGITRRIIDMTMAFVGAMRGGLAYVNLLANMFVASILGSATAQVAVMAQMM
VPEMEKKGYDKTFAAGLTAYSGMLGPIIPPSIMFVVYSVLAQVPVSDMLAAGIVPGILLT
VAFCLVIAAMGFVYNYPRGERMKLQERVRIVLDALPTLLIPFVIVGSILSGLANATEAAA
VGAVAAVLVGCFWIGELKFSDLPRMMLRAGIYSAVVLFLVAAAAVFSWVLVYGMVPQQVA
GWVQTVASDPVTFMLLVNVILLVIGTVIDGAPGLIMTVPILLPIATEVYGIDPIHFGVVV
VVNLVLGFLSPPVGLCFFVAAAVTGAKPGKMFLVTLPFFFVSCLMLVLLSLIPSLSTFFA
R
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory