Comparing SM_b20930 FitnessBrowser__Smeli:SM_b20930 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
35% identity, 98% coverage: 2:241/246 of query aligns to 3:239/501 of P04983
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 91% coverage: 1:224/246 of query aligns to 2:231/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 91% coverage: 1:224/246 of query aligns to 2:231/253 of 1g9xB
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
32% identity, 95% coverage: 2:235/246 of query aligns to 3:236/650 of 5ws4A
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
32% identity, 89% coverage: 1:219/246 of query aligns to 4:219/375 of 2d62A
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
29% identity, 91% coverage: 1:224/246 of query aligns to 1:223/592 of 5lj7A
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
29% identity, 91% coverage: 1:224/246 of query aligns to 1:223/615 of 5lilA
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 87% coverage: 8:222/246 of query aligns to 8:220/353 of 1oxvD
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 87% coverage: 8:222/246 of query aligns to 8:220/353 of 1oxvA
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 87% coverage: 8:222/246 of query aligns to 8:220/353 of 1oxuA
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
32% identity, 87% coverage: 8:222/246 of query aligns to 8:220/353 of Q97UY8
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 93% coverage: 8:235/246 of query aligns to 6:223/240 of 4ymuJ
1g291 Malk (see paper)
33% identity, 92% coverage: 1:226/246 of query aligns to 1:231/372 of 1g291
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
30% identity, 95% coverage: 3:235/246 of query aligns to 2:223/241 of 4u00A
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
31% identity, 89% coverage: 3:220/246 of query aligns to 17:225/378 of P69874
Sites not aligning to the query:
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
32% identity, 99% coverage: 3:246/246 of query aligns to 4:240/648 of P75831
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 92% coverage: 3:228/246 of query aligns to 1:226/343 of P30750
Sites not aligning to the query:
1vciA Crystal structure of the atp-binding cassette of multisugar transporter from pyrococcus horikoshii ot3 complexed with atp (see paper)
31% identity, 96% coverage: 1:235/246 of query aligns to 4:216/353 of 1vciA
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
29% identity, 96% coverage: 8:243/246 of query aligns to 9:231/285 of 4yerA
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
27% identity, 95% coverage: 2:235/246 of query aligns to 1:223/240 of 6mjpA
>SM_b20930 FitnessBrowser__Smeli:SM_b20930
MAVLELVNISKHFGAIQAVSDVSLSLERGEVVGLMGDNGAGKSTLVKMMAGNFRPSHGTI
RLDGAELVMHRPVEARQHGIEIVYQDLALCDNLTAAANVFLGREIRRGIGPLRILDYKAM
YRRAGEIFRELKSETPPRNLVRQMSGGQRQAVAIARTMLSEAKIVLMDEPTAAISVRQVA
EVLNLIRELRDRGIAVVLISHRMPDVFTVADRVIVMRRGRKVADKPIAASSPEEVTGLIT
GAIEQV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory