Comparing SM_b20966 FitnessBrowser__Smeli:SM_b20966 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 15 hits to proteins with known functional sites (download)
O69315 Beta-galactosidase; Beta-gal; Lactase; EC 3.2.1.23 from Thermus thermophilus (see paper)
52% identity, 100% coverage: 1:646/646 of query aligns to 4:644/645 of O69315
1kwkA Crystal structure of thermus thermophilus a4 beta-galactosidase in complex with galactose (see paper)
52% identity, 100% coverage: 1:646/646 of query aligns to 4:644/644 of 1kwkA
1kwgA Crystal structure of thermus thermophilus a4 beta-galactosidase (see paper)
52% identity, 100% coverage: 1:646/646 of query aligns to 4:644/644 of 1kwgA
6lvwA Polyextremophilic beta-galactosidase from the antarctic haloarchaeon halorubrum lacusprofundi (see paper)
39% identity, 100% coverage: 1:643/646 of query aligns to 5:658/668 of 6lvwA
3ttyA Crystal structure of beta-galactosidase from bacillus circulans sp. Alkalophilus in complex with galactose (see paper)
30% identity, 97% coverage: 3:628/646 of query aligns to 15:649/675 of 3ttyA
3ttsA Crystal structure of beta-galactosidase from bacillus circulans sp. Alkalophilus (see paper)
30% identity, 97% coverage: 3:628/646 of query aligns to 15:649/675 of 3ttsA
4uzsA Crystal structure of bifidobacterium bifidum beta-galactosidase (see paper)
31% identity, 100% coverage: 3:645/646 of query aligns to 24:686/687 of 4uzsA
4ucfA Crystal structure of bifidobacterium bifidum beta-galactosidase in complex with alpha-galactose (see paper)
30% identity, 100% coverage: 3:645/646 of query aligns to 23:681/682 of 4ucfA
Sites not aligning to the query:
4uniA Beta-(1,6)-galactosidase from bifidobacterium animalis subsp. Lactis bl-04 in complex with galactose (see paper)
35% identity, 72% coverage: 3:470/646 of query aligns to 23:484/689 of 4uniA
4uozA Beta-(1,6)-galactosidase from bifidobacterium animalis subsp. Lactis bl-04 nucleophile mutant e324a in complex with galactose (see paper)
35% identity, 72% coverage: 3:470/646 of query aligns to 22:483/688 of 4uozA
5e9aB Crystal structure analysis of the cold-adamped beta-galactosidase from rahnella sp. R3 (see paper)
30% identity, 88% coverage: 3:570/646 of query aligns to 19:593/684 of 5e9aB
8ibtA Crystal structure of gh42 beta-galactosidase bibga42a from bifidobacterium longum subspecies infantis e318s mutant in complex with lacto-n-tetraose (see paper)
31% identity, 95% coverage: 3:616/646 of query aligns to 25:651/694 of 8ibtA
8ibsA Crystal structure of gh42 beta-galactosidase bibga42a from bifidobacterium longum subspecies infantis e160a/e318a mutant in complex with galactose (see paper)
30% identity, 95% coverage: 3:616/646 of query aligns to 25:651/691 of 8ibsA
5dfaA 3d structure of the e323a catalytic mutant of gan42b, a gh42 beta- galactosidase from g. Stearothermophilus (see paper)
29% identity, 90% coverage: 3:584/646 of query aligns to 20:604/685 of 5dfaA
O31529 Beta-galactosidase YesZ; Beta-gal; Probable rhamnogalacturonan beta-galactosidase; EC 3.2.1.23 from Bacillus subtilis (strain 168) (see paper)
28% identity, 79% coverage: 2:509/646 of query aligns to 9:502/663 of O31529
>SM_b20966 FitnessBrowser__Smeli:SM_b20966
MCYYPEQWPRGKWAEDARRMVELGLSWVRIGEFAWAKIEPRSGEFHWEWLDEAIDVLGKA
GLKVILGTPTAAPPKWLVNRYPEILPVDATGAVRKFGARRHYCFSSRRYRSEAARITEAM
ARRYGEHIYVHAWQTDNEYGDHDTIYSYSAEAVGAFRLWLAERYGSIDELNRAWGTSFWS
MRYDSFEEIDLPNNLVEEPSPTHGVDFIRFSSDQVKSFNKAQVDIIRAHSPGRPVTHNFM
SQNTDFDHYRVGEDIDIASWDVYPMGGLLNGRLAAKDKEHYLRVGDPDQPAFNHDLYRAV
GRGRVWVMEQQPGPVNWAAHNQSPADGMVRLWTWLAYAHGVDMVSYFRWRQAPFAQEQFH
AGLLLPNSEADQGYLEVAEVVAEMKRLPEGEVRGKAQVAIVLDYESRWATRVLPQGRSYS
ASAVALDWYSTVARLGVDVDFIGQHSDIAGYKLILAPDLVIAEEAFVERLTRADAKVVFG
ARSGSKTRDMHIPEGLPPGPLAKLIDISVSRVESLPEFHSETVLYGNEAYEAGGWRETVR
TSETVIASFDGEYRNGAPALVGSDKARYLAVAANGALLDKVIGDALGWAGLESLPDLGDL
RVTRRGNLRFAFNFGRIPAEVPAGASAEFYVGGRTLKPVDVAIWRE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory