Comparing SM_b20975 FitnessBrowser__Smeli:SM_b20975 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
34% identity, 34% coverage: 355:543/549 of query aligns to 32:213/214 of 4ymwC
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
34% identity, 34% coverage: 355:543/549 of query aligns to 32:213/215 of 4ymtC
>SM_b20975 FitnessBrowser__Smeli:SM_b20975
MSFLRSVRPSNLIILTALPFIIYLFASSGDYQRSLRAILGVENGSSAFVPGFLALLVAFG
SGVAVLVFSRAKAPRPRLALAAAVLNLAAAASVLLSDAVHPYLASVVANAVDPFTSDLVV
KGLSPRQLTDAADMTLRGIEAVLFPAYFALTLLGFMLFFGAGKASTPESIMRRLGALSIG
LVSSGGLLFILFFAHIAFAAGVATTVRAAIAAYLLAAIIGLIWVGLLQLHYTARTSIIFA
LATLGLTLVAAWFLLQPRTAYVLAGRLDGTVAIVSNTPSGLIGAVRFGQYPGAPGEEAAV
RTFLGPAEAVAAMEKNEVTAALLPSAAVPGGLPLLWETAALNDRDRAAGITFAVLAIILG
LLTFGGYLHRRHPLAIGSEFVVDTIRGIPMLVIVLYVGLPLSGALKDATQGVLDPPNLMR
GIVAMALAYSAYLAEIFRSGINAIPIGQIEAARSIGLNRWQTARLVVLPQAFRIIIPPLG
NELIAILKDTSLLSILSIRDITQRMREFQSASFLPFAPYNSAAIFYIFLTLAAASLINMI
ERKYDIKHR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory