Comparing SMa0072 FitnessBrowser__Smeli:SMa0072 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
36% identity, 97% coverage: 5:239/243 of query aligns to 4:233/501 of P04983
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
31% identity, 92% coverage: 4:226/243 of query aligns to 1:215/241 of 4u00A
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 93% coverage: 2:226/243 of query aligns to 1:229/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 93% coverage: 2:226/243 of query aligns to 1:229/253 of 1g9xB
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
28% identity, 93% coverage: 3:228/243 of query aligns to 15:229/378 of P69874
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
28% identity, 93% coverage: 5:230/243 of query aligns to 3:229/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
28% identity, 93% coverage: 5:230/243 of query aligns to 3:229/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
28% identity, 93% coverage: 5:230/243 of query aligns to 3:229/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
28% identity, 93% coverage: 5:230/243 of query aligns to 3:229/242 of 2oljA
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
31% identity, 98% coverage: 5:241/243 of query aligns to 4:238/650 of 5ws4A
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
30% identity, 91% coverage: 6:226/243 of query aligns to 4:220/353 of 1oxvD
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
30% identity, 91% coverage: 6:226/243 of query aligns to 4:220/353 of 1oxvA
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
30% identity, 91% coverage: 6:226/243 of query aligns to 4:220/353 of 1oxuA
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
30% identity, 91% coverage: 6:226/243 of query aligns to 4:220/353 of Q97UY8
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
31% identity, 96% coverage: 5:238/243 of query aligns to 3:230/230 of 6z4wA
A0A0H2ZM82 Cell division ATP-binding protein FtsE from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
31% identity, 96% coverage: 5:238/243 of query aligns to 3:230/230 of A0A0H2ZM82
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
31% identity, 96% coverage: 5:237/243 of query aligns to 3:229/229 of 6z67B
P19566 Maltose/maltodextrin import ATP-binding protein MalK; EC 7.5.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
32% identity, 91% coverage: 6:225/243 of query aligns to 4:212/369 of P19566
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
28% identity, 91% coverage: 5:226/243 of query aligns to 1:215/240 of 4ymuJ
2awnB Crystal structure of the adp-mg-bound e. Coli malk (crystallized with atp-mg) (see paper)
31% identity, 91% coverage: 6:225/243 of query aligns to 3:211/374 of 2awnB
>SMa0072 FitnessBrowser__Smeli:SMa0072
MTTPIIECRNLQKWYSGVHALKNVDLTIHPGETVGLVGDNGAGKSTLIKILSGVHHQDSG
DVLIEGRRVALRSPKDAMRYGLETIYQYNSMVPTMSIARNLFIGREPMKWSVFGVGIMDQ
KRMRVESIQAIADVDLHLRSPDALVGELSGGQRQGVAIARAMHFKSKVLILDEPTNHLSV
KETDKVIGFVRGLKAQGLTGIFISHNMQHVFQSCDRIVAMARGEIVFDKPTADTSIDEVH
ALL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory