Comparing SMa0151 FitnessBrowser__Smeli:SMa0151 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 5 hits to proteins with known functional sites (download)
Q920F5 Malonyl-CoA decarboxylase, mitochondrial; MCD; EC 4.1.1.9 from Rattus norvegicus (Rat) (see paper)
34% identity, 37% coverage: 546:882/909 of query aligns to 134:492/492 of Q920F5
Sites not aligning to the query:
4f0xD Crystal structure of human malonyl-coa decarboxylase (peroxisomal isoform) (see paper)
35% identity, 36% coverage: 546:873/909 of query aligns to 93:438/445 of 4f0xD
O95822 Malonyl-CoA decarboxylase, mitochondrial; MCD; EC 4.1.1.9 from Homo sapiens (Human) (see 2 papers)
34% identity, 36% coverage: 546:873/909 of query aligns to 135:484/493 of O95822
Q99J39 Malonyl-CoA decarboxylase, mitochondrial; MCD; EC 4.1.1.9 from Mus musculus (Mouse) (see paper)
33% identity, 37% coverage: 546:882/909 of query aligns to 134:492/492 of Q99J39
Sites not aligning to the query:
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
30% identity, 46% coverage: 9:427/909 of query aligns to 11:424/427 of 8b01B
>SMa0151 FitnessBrowser__Smeli:SMa0151
MIVACLFVLLATGMPIAFALGLAAFAALYMQSGAGIFYVLGDTMFSGIANLAYVSIPMFV
LMGAAVASSPAGSDLYTSLDRWLNRIPGGLILSNIGACAIFSGMTGSSPATCAAIGKMGI
PEMMRRGYPASVASGSIAAGGTLGILIPPSVTLIVYGIATETSIGRLFMAGILPGILLTI
MFMTWAVIDCKRKGYEFEARLVRYSMKERLAVLPRILPFLLIIAGTLYVLYGGIATPSEA
AGAGAFLTLAVVIVAYRLFRFRPVAGIFGSAMKESVMIMMIMAAAELFAFALSSLFITQT
VAAAIADMEVNRWVLMAVINVFLLICGMFLPPVAVIVMTSPMLFPIVTQAGFDPYWFAIV
LTINMEVGLITPPIGLNLFVINAIAPQIPTKDILWGSLPYVLVMFLAIILLCVFPDVATW
LPNQMLGDRPMNTTSFFSDMLQSIAERGRRFLSLGPARNGDVNPVGTMEALCDTLLSSRG
EASGMALAKNILDRWQGFDQDKRRDFMLALLSRFGPDIERLERAIDAYRADPTPKALLEM
SMAAEPRRQELIRRLNLAPNGIATLVRMRADLLELKAQNPDLEAVDTDFAHLFGSWFNRG
FLVLRPISWSTPADILEKIIRYEAVHHIGGWDELRRRLAPEDRRCFAFFHPQLVDDPLIF
VEVALTREMPPNIADLLKEDRAPIRATDATTAVFYSISNCQEGLRGISFGNFLIKQVVED
LRRDLPRLDTFVTLSPVPGFADWLSRERQAETSNALSAADRSRLAALDEPDWADQPEIAA
AIQPSLTAAAAWYFLRARNRNGKTVDPVARFHLGNGARLERINFLGDRSERAMRQAHGLM
VNYLYKLDDIETNHEAFATRGEVVAAPAIRRLIPADRSSRSLVPGPNVFPPGVRSADAPG
RKGDKEFTS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory