SitesBLAST
Comparing SMc00110 FitnessBrowser__Smeli:SMc00110 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q4W6G0 Quinohemoprotein alcohol dehydrogenase ADH-IIG; ADH IIG; Alcohol dehydrogenase (azurin); EC 1.1.9.1 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 2 papers)
27% identity, 84% coverage: 120:768/777 of query aligns to 6:577/718 of Q4W6G0
- C138 (= C262) modified: Disulfide link with 139
- C139 (vs. gap) modified: Disulfide link with 138
- R144 (= R263) binding
- T189 (= T329) binding
- GA 205:206 (≠ YS 349:350) binding
- E207 (≠ T351) binding
- T264 (≠ N395) binding
- N284 (= N415) binding
- D329 (= D459) binding
- K356 (= K487) binding
- W415 (≠ F580) binding
- DW 419:420 (≠ NW 584:585) binding
Sites not aligning to the query:
- 1:29 signal peptide
- 30:718 modified: mature protein, Quinohemoprotein alcohol dehydrogenase ADH-IIG
- 635 binding covalent
- 638 binding covalent
- 639 binding axial binding residue
- 676 binding axial binding residue
1yiqA Molecular cloning and structural analysis of quinohemoprotein alcohol dehydrogenase adhiig from pseudomonas putida hk5. Compariison to the other quinohemoprotein alcohol dehydrogenase adhiib found in the same microorganism. (see paper)
26% identity, 80% coverage: 145:768/777 of query aligns to 2:548/684 of 1yiqA
- active site: E178 (≠ T351), N255 (= N415), D300 (= D459)
- binding calcium ion: E178 (≠ T351), N255 (= N415), D300 (= D459)
- binding pyrroloquinoline quinone: E63 (≠ Q214), C109 (= C262), C110 (vs. gap), R115 (= R263), T160 (= T329), G175 (≠ N348), G176 (≠ Y349), A177 (≠ S350), E178 (≠ T351), T235 (≠ N395), W237 (= W397), K327 (= K487), D390 (≠ N584), W391 (= W585), F477 (≠ Y681), A542 (≠ S762)
Sites not aligning to the query:
- binding heme c: 605, 606, 608, 609, 610, 623, 626, 630, 634, 637, 638, 642, 645, 646, 647, 648, 650
Q8GR64 Quinohemoprotein alcohol dehydrogenase ADH IIB; ADH IIB; Alcohol dehydrogenase (azurin); EC 1.1.9.1 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
27% identity, 77% coverage: 163:758/777 of query aligns to 38:543/690 of Q8GR64
- E81 (≠ Q214) binding
- C127 (≠ T261) modified: Disulfide link with 128
- C128 (= C262) modified: Disulfide link with 127
- R133 (= R263) binding
- T177 (= T329) binding
- GA 193:194 (≠ ND 346:347) binding
- E195 (≠ N348) binding
- T252 (≠ N395) binding
- N272 (= N415) binding
- D317 (= D459) binding
- K344 (= K487) binding
- NW 404:405 (= NW 584:585) binding
Sites not aligning to the query:
- 1:22 signal peptide
- 23:690 modified: mature protein, Quinohemoprotein alcohol dehydrogenase ADH IIB
- 547 binding
- 613 binding covalent
- 616 binding covalent
- 617 binding axial binding residue
- 655 binding axial binding residue
1kv9A Structure at 1.9 a resolution of a quinohemoprotein alcohol dehydrogenase from pseudomonas putida hk5 (see paper)
27% identity, 77% coverage: 163:758/777 of query aligns to 16:521/664 of 1kv9A
- active site: E173 (≠ N348), N250 (= N415), D295 (= D459)
- binding acetone: E173 (≠ N348), D295 (= D459)
- binding calcium ion: E173 (≠ N348), N250 (= N415), D295 (= D459)
- binding heme c: A101 (≠ D256), R102 (= R257)
- binding pyrroloquinoline quinone: E59 (≠ Q214), C105 (≠ T261), C106 (= C262), R111 (= R263), T155 (= T329), G170 (≠ A344), A172 (≠ D347), E173 (≠ N348), T230 (≠ N395), W232 (= W397), K322 (= K487), N382 (= N584), W383 (= W585), W460 (≠ F690)
Sites not aligning to the query:
- binding heme c: 590, 591, 594, 595, 605, 606, 608, 611, 615, 619, 623, 631, 633, 636
- binding pyrroloquinoline quinone: 525
7o6zB Structure of a neodymium-containing, xoxf1-type methanol dehydrogenase (see paper)
26% identity, 78% coverage: 162:764/777 of query aligns to 11:547/588 of 7o6zB
- binding methanol: E173 (= E353), W263 (≠ Q416), D314 (= D459)
- binding Neodymium Ion: E173 (= E353), N259 (= N415), D314 (= D459), D316 (= D461)
- binding pyrroloquinoline quinone: E55 (≠ Q214), C105 (≠ W268), C106 (≠ A269), R111 (≠ A274), T155 (≠ N321), G170 (≠ S350), G171 (≠ T351), D172 (≠ T352), E173 (= E353), W241 (= W397), D316 (= D461), R341 (≠ K487), D403 (≠ N584), W481 (≠ I697), G544 (= G761), W545 (≠ S762)
7o6zA Structure of a neodymium-containing, xoxf1-type methanol dehydrogenase (see paper)
26% identity, 78% coverage: 162:764/777 of query aligns to 11:547/588 of 7o6zA
O05542 Alcohol dehydrogenase (quinone), dehydrogenase subunit; ADH; Alcohol dehydrogenase (quinone), acceptor subunit; Alcohol dehydrogenase (quinone), subunit I; Ethanol:Q2 reductase; G3-ADH subunit I; Quinohemoprotein alcohol dehydrogenase; Quinohemoprotein-cytochrome c complex; Ubiquinol oxidase; EC 1.1.5.5 from Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans) (see paper)
26% identity, 79% coverage: 148:758/777 of query aligns to 39:584/757 of O05542
Sites not aligning to the query:
- 1:34 signal peptide
- 35 modified: Pyrrolidone carboxylic acid
8gy2A Cryo-em structure of membrane-bound alcohol dehydrogenase from gluconobacter oxydans
26% identity, 79% coverage: 148:758/777 of query aligns to 5:550/723 of 8gy2A
- binding calcium ion: E181 (≠ T351), N263 (= N415), D308 (= D459)
- binding heme c: D104 (= D256)
- binding pyrroloquinoline quinone: C107 (vs. gap), C108 (vs. gap), D163 (≠ S328), G179 (≠ A344), A180 (≠ S350), E181 (≠ T351), W245 (= W397), N263 (= N415), D308 (= D459), K335 (= K487), F398 (≠ W585), W489 (vs. gap)
Sites not aligning to the query:
- binding heme c: 618, 619, 622, 623, 633, 634, 636, 639, 652, 660, 662, 665
6zcvA Crystal structure of lanthanide-dependent alcohol dehydrogenase pedh from pseudomonas putida kt2440
24% identity, 76% coverage: 174:763/777 of query aligns to 26:531/562 of 6zcvA
- active site: E172 (≠ N348), N254 (= N415), D296 (= D459)
- binding calcium ion: N161 (≠ V335), K163 (≠ D337), P278 (≠ I441), D279 (≠ N442)
- binding pyrroloquinoline quinone: Q60 (= Q214), C104 (≠ T261), C105 (= C262), I108 (vs. gap), R110 (= R263), S154 (= S328), G170 (≠ N346), G171 (≠ D347), E172 (≠ N348), W236 (= W397), D298 (= D461), R323 (≠ K487), N390 (= N584), W466 (≠ I697), G529 (= G761), A530 (≠ S762)
6oc6A Lanthanide-dependent methanol dehydrogenase xoxf from methylobacterium extorquens, in complex with lanthanum and pyrroloquinoline quinone (see paper)
25% identity, 76% coverage: 176:764/777 of query aligns to 25:539/579 of 6oc6A
- active site: E171 (≠ Q354), N255 (= N415), D297 (= D459)
- binding pyrroloquinoline quinone: E55 (≠ Q214), C103 (= C262), C104 (vs. gap), R109 (= R263), T153 (= T329), S168 (≠ T351), G169 (≠ T352), G170 (≠ E353), E171 (≠ Q354), W237 (= W397), D299 (= D461), R324 (≠ K487), D395 (≠ N584), W473 (≠ I697), G536 (= G761), W537 (≠ S762)
1lrwA Crystal structure of methanol dehydrogenase from p. Denitrificans (see paper)
24% identity, 78% coverage: 162:768/777 of query aligns to 11:542/600 of 1lrwA
- active site: E177 (≠ T351), N261 (= N415), D303 (= D459)
- binding calcium ion: E177 (≠ T351), N261 (= N415), D303 (= D459)
- binding pyrroloquinoline quinone: E55 (≠ Q214), C103 (= C262), C104 (vs. gap), R109 (= R263), T159 (= T329), S174 (≠ A344), G175 (≠ V345), A176 (≠ S350), E177 (≠ T351), T241 (≠ N395), W243 (= W397), R331 (≠ K487), W476 (≠ Y681), W540 (≠ K766)
6damA Crystal structure of lanthanide-dependent methanol dehydrogenase xoxf from methylomicrobium buryatense 5g (see paper)
30% identity, 44% coverage: 162:503/777 of query aligns to 11:344/563 of 6damA
- active site: E171 (≠ D347), N259 (= N415), D301 (= D459)
- binding pyrroloquinoline quinone: E55 (= E206), C103 (≠ T261), C104 (= C262), R109 (= R263), T153 (= T329), S168 (≠ A344), G169 (≠ V345), G170 (≠ N346), E171 (≠ D347), T239 (vs. gap), W241 (= W397), D303 (= D461), R328 (≠ K487)
Sites not aligning to the query:
4aahA Methanol dehydrogenase from methylophilus w3a1 (see paper)
24% identity, 75% coverage: 173:753/777 of query aligns to 22:522/571 of 4aahA
- active site: E171 (≠ T351), N255 (= N415), D297 (= D459)
- binding calcium ion: E171 (≠ T351), N255 (= N415)
- binding pyrroloquinoline quinone: E55 (≠ Q214), C103 (≠ T261), C104 (= C262), R109 (= R263), S168 (≠ A344), A170 (≠ S350), E171 (≠ T351), W237 (= W397), R324 (≠ K487), N387 (= N584), W467 (≠ I697)
Sites not aligning to the query:
2d0vA Crystal structure of methanol dehydrogenase from hyphomicrobium denitrificans (see paper)
23% identity, 78% coverage: 164:768/777 of query aligns to 13:542/597 of 2d0vA
- active site: E177 (≠ T351), N261 (= N415), D303 (= D459)
- binding calcium ion: E177 (≠ T351), N261 (= N415), D303 (= D459)
- binding pyrroloquinoline quinone: E55 (≠ Q214), R109 (= R263), T159 (= T329), S174 (≠ A344), G175 (≠ V345), A176 (≠ S350), E177 (≠ T351), T241 (≠ N395), W243 (= W397), R331 (≠ K487), N394 (= N584), W476 (≠ I697), G539 (≠ T765), W540 (≠ K766)
P12293 Methanol dehydrogenase [cytochrome c] subunit 1; MDH large subunit alpha; MEDH; EC 1.1.2.7 from Paracoccus denitrificans (see 2 papers)
23% identity, 77% coverage: 162:758/777 of query aligns to 43:567/631 of P12293
- C135 (= C262) modified: Disulfide link with 136
- C136 (vs. gap) modified: Disulfide link with 135
- C418 (≠ Y576) modified: Disulfide link with 447
- C447 (≠ Y603) modified: Disulfide link with 418
Sites not aligning to the query:
Q9Z4J7 Quinoprotein ethanol dehydrogenase; QEDH; Quinoprotein alcohol dehydrogenase (cytochrome c); Quinoprotein alcohol dehydrogenase (cytochrome c550); EC 1.1.2.8 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 4 papers)
27% identity, 43% coverage: 167:500/777 of query aligns to 54:391/623 of Q9Z4J7
- E95 (≠ V208) binding
- C139 (≠ T261) modified: Disulfide link with 140
- CC 139:140 (≠ TC 261:262) mutation to AA: 15-fold decrease in catalytic activity with the natural electron acceptor cytochrome c550. Does not affect, or even increases, catalytic activity with artificial electron acceptors. Shows high decreased affinity for primary alcohols, while the affinity for the secondary alcohol 2-propanol is unaltered.
- C140 (= C262) modified: Disulfide link with 139
- R145 (= R263) binding
- T189 (≠ S328) binding
- HGS 207:209 (≠ GGA 342:344) binding
- E213 (≠ N348) binding
- N300 (= N415) binding
- D350 (= D459) binding
- R378 (≠ K487) binding
Sites not aligning to the query:
- 1:34 signal peptide
- 45 binding
- 48 binding
- 51 binding
- 523 binding
- 587 binding
1flgA Crystal structure of the quinoprotein ethanol dehydrogenase from pseudomonas aeruginosa (see paper)
27% identity, 43% coverage: 167:500/777 of query aligns to 20:357/582 of 1flgA
- active site: E179 (≠ N348), N266 (= N415), D316 (= D459)
- binding calcium ion: E179 (≠ N348), N266 (= N415), D316 (= D459)
- binding pyrroloquinoline quinone: E61 (≠ V208), C105 (≠ T261), C106 (= C262), R111 (≠ A274), T155 (≠ S328), S176 (≠ V345), G177 (≠ N346), D178 (= D347), W248 (vs. gap), R344 (≠ K487)
Sites not aligning to the query:
6fkwA Europium-containing methanol dehydrogenase (see paper)
26% identity, 44% coverage: 162:502/777 of query aligns to 11:341/576 of 6fkwA
- active site: E172 (≠ D347), N256 (= N415), D299 (= D459), D301 (= D461)
- binding europium ion: E172 (≠ D347), N256 (= N415), D299 (= D459), D301 (= D461)
- binding pyrroloquinoline quinone: E55 (≠ Q214), C104 (≠ R257), C105 (≠ Q258), R110 (= R263), T154 (= T329), S169 (≠ A344), G170 (≠ V345), G171 (≠ N346), E172 (≠ D347), T236 (≠ N395), W238 (= W397), D301 (= D461), R326 (≠ K487)
Sites not aligning to the query:
4maeA Methanol dehydrogenase from methylacidiphilum fumariolicum solv (see paper)
27% identity, 44% coverage: 162:502/777 of query aligns to 11:341/577 of 4maeA
- active site: E172 (≠ D347), N256 (= N415), D299 (= D459)
- binding cerium (iii) ion: E172 (≠ D347), N256 (= N415), D299 (= D459), D301 (= D461)
- binding pyrroloquinoline quinone: E55 (≠ Q214), C104 (= C262), C105 (vs. gap), R110 (= R263), T154 (= T329), S169 (≠ A344), G170 (≠ V345), G171 (≠ N346), E172 (≠ D347), T236 (≠ N395), W238 (= W397), D301 (= D461), R326 (≠ K487)
Sites not aligning to the query:
1kb0A Crystal structure of quinohemoprotein alcohol dehydrogenase from comamonas testosteroni (see paper)
25% identity, 76% coverage: 176:764/777 of query aligns to 40:546/670 of 1kb0A
- active site: E185 (≠ T351), N263 (= N415), D308 (= D459)
- binding calcium ion: E185 (≠ T351), N263 (= N415), D308 (= D459)
- binding pyrroloquinoline quinone: E70 (≠ Q214), C116 (= C262), C117 (vs. gap), R122 (= R263), T167 (= T329), G182 (≠ N348), G183 (≠ Y349), A184 (≠ S350), E185 (≠ T351), T243 (≠ S396), W245 (= W397), D308 (= D459), K335 (≠ A510), N394 (= N584), W395 (= W585), W479 (≠ L686), G543 (= G761), V544 (≠ S762)
- binding tetrahydrofuran-2-carboxylic acid: C116 (= C262), C117 (vs. gap), E185 (≠ T351), D308 (= D459), P389 (≠ N579)
Sites not aligning to the query:
- binding heme c: 598, 599, 602, 603, 617, 620, 631, 637, 640, 642, 643, 645
Query Sequence
>SMc00110 FitnessBrowser__Smeli:SMc00110
MVIVLTAVVFAVIGLALCGGGTRLLLLGGSPYYLIAGLGFLLTAFLLFRRRAAALWVYAL
VVLGSLAWAIWEVGFDWWQLGPRGGVIILLGLWLLTPWIRRPLGFVSPTGEQYGASAWPL
ALVSLLSVGVALYSMTQDPHDIRGDLPGEVAANANLGGNVPPGEWHQYGRTPFGQRYSPL
DQIRPENVANLQVAWQYQTGDVKLPEDVSETTYQVTPLKVKDTLYVCTPHNWAIALDAAT
GQEKWKYDSNSGMNPDRQHQTCRGVTYWADPAAAPGSPCAERVYLPTSDARLIALDATNG
EVCTSFADNGVLHLEQGMKHNPAGYYYSTSPPVAVGDRLIIGGAVNDNYSTTEQSGVIRA
FNINTGALIWNWDSGNPDVTAPLPPGQTYTTNSPNSWSVFSYDEGLGLVYIPMGNQVPDQ
LGMGRSEHVEKYSSSIVALDINTGAVRWVRQTVHHDLWDMDVPAQPALLDITREDGTVVP
ALVGPTKQGDIYVLDRRSGEPIIPIEEVPAPGGAIPEDFTAPTQPVSGLTFMPPPLMERD
MWGISMFDQLACRIEFRTLKYEGRYTPPSLEGTIVYPGNFGTFNWGSVAVDPERQVMFGM
PTYLAFTSRLVPRDQIAPKGEGEKGSEQGLNRNEGAPYGVFMGPFLGPLGIPCQAPPWGY
VAGADLRTGKIAYKHKNGTVYDMTPLPLPFKLGVPGIGGPMITKGGLAFLGAAVDDYFRA
YDLTTGEQLWEARLPAGGQSTPMTYTVGEKQYVLIVAGGHGSVGTKPGDYVIAYTLP
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory