Comparing SMc00273 FitnessBrowser__Smeli:SMc00273 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
33% identity, 98% coverage: 11:419/419 of query aligns to 10:417/427 of 8b01B
>SMc00273 FitnessBrowser__Smeli:SMc00273
MTAIMTGLFAALLAISVPVGYALIIAAGAAILWQGGTPTVLAVVKLFQPTQSFPLLAIPF
FILSGSLMMSGTLGQKLVQFAAALVGRFHGGMGQVTVVGSTIFGGVSGSAVAEASALGSM
LIPWQKKEGYPAGFAAAVTASSSTIAGLIPPSIPLILFSTVANSSIASLFSAAVLPGLML
AGGMMIVCYLSGRIRNFPRLTDAGQLKSFGRSMLSALPALAMPFFIILLLRAGIATPTEV
SVIAVFYALLVSLLLYRDLTWERIYAALVGTVITTGVVMLVIAASSLVGHVLITERVPTI
VANWALETLGSAILIILMMNLIMLVVGMFLDLPAAILLLGPTFVAIGHAIGMDPIQLGVM
ICINLSIGLFTPPIGTTLFIGAVIARVPIGAVVKELWPFYIVAAAVLVLMSYVPALTIY
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory