Comparing SMc00433 FitnessBrowser__Smeli:SMc00433 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8bvkA The crystal structure of o-glycoside cleaving beta-eliminase from a. Tumefaciens atoge (see paper)
33% identity, 29% coverage: 129:215/300 of query aligns to 108:196/225 of 8bvkA
Sites not aligning to the query:
>SMc00433 FitnessBrowser__Smeli:SMc00433
MIRYGTNPIAWSNDDDHSIGAHLTLEDCLSDCRKIGFDGIEKGHKMPSDPEALKQKLSSY
DLVFVSGWHSTNLLTHDVEAEKKAIQPHLDLLKHNGCKVAIVCETSNAIHGDDSKSLVKD
KPVLPADKWEKFGTDLEAIAEYCAGQGVDLVYHHHMGTIVQTGEEIDLLMRNTGPATKLL
LDTGHAWFGGSDPAEVARKYMGRVRHIHCKNVRPAVRKVVEGEGLSFLEGVRRGVFTVPG
DEEGGVDFLPVLKTAAEHGYDGWLVIEAEQDSAVRNPFEYQSLGLKSLKTFAREAGLDRA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory