SitesBLAST – Find functional sites

 

SitesBLAST

Comparing SMc00433 FitnessBrowser__Smeli:SMc00433 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8bvkA The crystal structure of o-glycoside cleaving beta-eliminase from a. Tumefaciens atoge (see paper)
33% identity, 29% coverage: 129:215/300 of query aligns to 108:196/225 of 8bvkA

query
sites
8bvkA
W
 
W
E
 
T
K
 
A
F
 
F
G
 
G
T
 
K
D
 
E
L
 
L
E
 
G
A
 
G
I
 
Y
A
 
A
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D
Y
 
K
C
 
L
A
 
S
G
 
A
Q
 
A
G
 
G
V
 
L
D
 
S
L
 
M
V
 
A
Y
 
Y
H
|
H
H
 
N
H
 
H
M
 
D
G
 
F
T
 
E
I
 
M
V
 
V
Q
 
K
T
 
F
-
 
D
-
 
G
G
 
K
E
 
T
E
 
A
I
 
L
D
x
E
L
 
L
L
 
L
M
 
L
R
x
D
N
 
A
T
 
A
G
 
G
P
 
P
A
 
K
T
 
L
K
 
Q
L
 
S
L
x
E
L
 
L
D
 
D
T
 
V
G
 
A
H
 
W
A
 
V
W
 
A
F
 
R
G
 
S
G
 
G
S
 
N
D
 
D
P
 
P
A
 
A
E
 
E
V
 
F
A
 
L
R
 
G
K
 
T
Y
 
L
M
 
N
G
 
G
R
 
R
V
 
V
R
 
F
H
 
A
I
 
I
H
 
H
C
 
A
K
 
K
N
 
D
V
 
D
R
 
A
P
 
P
A
 
A

Sites not aligning to the query:

Query Sequence

>SMc00433 FitnessBrowser__Smeli:SMc00433
MIRYGTNPIAWSNDDDHSIGAHLTLEDCLSDCRKIGFDGIEKGHKMPSDPEALKQKLSSY
DLVFVSGWHSTNLLTHDVEAEKKAIQPHLDLLKHNGCKVAIVCETSNAIHGDDSKSLVKD
KPVLPADKWEKFGTDLEAIAEYCAGQGVDLVYHHHMGTIVQTGEEIDLLMRNTGPATKLL
LDTGHAWFGGSDPAEVARKYMGRVRHIHCKNVRPAVRKVVEGEGLSFLEGVRRGVFTVPG
DEEGGVDFLPVLKTAAEHGYDGWLVIEAEQDSAVRNPFEYQSLGLKSLKTFAREAGLDRA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory