Comparing SMc00723 FitnessBrowser__Smeli:SMc00723 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4xg1B Psychromonas ingrahamii diaminopimelate decarboxylase with llp
47% identity, 97% coverage: 2:411/422 of query aligns to 1:409/418 of 4xg1B
4xg1A Psychromonas ingrahamii diaminopimelate decarboxylase with llp
43% identity, 97% coverage: 2:411/422 of query aligns to 1:384/393 of 4xg1A
B4XMC6 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori (Campylobacter pylori) (see paper)
41% identity, 94% coverage: 20:415/422 of query aligns to 6:398/405 of B4XMC6
3c5qA Crystal structure of diaminopimelate decarboxylase (i148l mutant) from helicobacter pylori complexed with l-lysine
41% identity, 94% coverage: 20:415/422 of query aligns to 4:390/394 of 3c5qA
Q58497 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
38% identity, 99% coverage: 5:421/422 of query aligns to 12:437/438 of Q58497
1tufA Crystal structure of diaminopimelate decarboxylase from m. Jannaschi (see paper)
38% identity, 99% coverage: 5:421/422 of query aligns to 8:433/434 of 1tufA
1twiA Crystal structure of diaminopimelate decarboxylase from m. Jannaschii in co-complex with l-lysine (see paper)
38% identity, 99% coverage: 5:421/422 of query aligns to 8:433/434 of 1twiA
6n2aA Meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform 1)
38% identity, 92% coverage: 8:397/422 of query aligns to 10:400/422 of 6n2aA
2yxxA Crystal structure analysis of diaminopimelate decarboxylate (lysa)
39% identity, 92% coverage: 18:405/422 of query aligns to 3:373/385 of 2yxxA
Q9X1K5 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
39% identity, 92% coverage: 18:405/422 of query aligns to 4:374/386 of Q9X1K5
1hkvA Mycobacterium diaminopimelate dicarboxylase (lysa) (see paper)
33% identity, 96% coverage: 9:415/422 of query aligns to 21:444/446 of 1hkvA
P9WIU7 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
33% identity, 96% coverage: 9:415/422 of query aligns to 22:445/447 of P9WIU7
8d5rA Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- ornithine (see paper)
29% identity, 98% coverage: 4:415/422 of query aligns to 23:455/461 of 8d5rA
P00861 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli (strain K12)
31% identity, 94% coverage: 11:406/422 of query aligns to 5:409/420 of P00861
1ko0A Crystal structure of a d,l-lysine complex of diaminopimelate decarboxylase
31% identity, 94% coverage: 11:406/422 of query aligns to 4:408/419 of 1ko0A
1knwA Crystal structure of diaminopimelate decarboxylase
31% identity, 94% coverage: 11:406/422 of query aligns to 4:408/421 of 1knwA
8d5dA Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- arginine (see paper)
30% identity, 98% coverage: 4:415/422 of query aligns to 22:453/458 of 8d5dA
8d88A Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- lysine (see paper)
29% identity, 98% coverage: 4:415/422 of query aligns to 23:457/461 of 8d88A
8d4iA Structure of y430f d-ornithine/d-lysine decarboxylase complex with putrescine (see paper)
29% identity, 98% coverage: 4:415/422 of query aligns to 23:457/462 of 8d4iA
5x7mA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
29% identity, 98% coverage: 2:416/422 of query aligns to 16:443/443 of 5x7mA
>SMc00723 FitnessBrowser__Smeli:SMc00723
MNHFQYRDGILYAEDVPLTEIARAVGTPFYCYSTATLERHYKVFSQAFADVDAMVCYAMK
ANSNQAVLKTLGRLGAGLDVVSEGELRRALAAGIPAGRIMFSGVGKTAREMDFALEAGIY
CFNVESEPELEVLNQRAVRAGRRAPVSFRINPDVDARTHAKISTGKKENKFGISWERARG
VYAHAAELPGIEVTGIDMHIGSQITELQPFDDAFKLLRELVDTLRSDGHVIEHVDIGGGL
GIPYREDNNPPPLPDAYADIVKNQLKGLDCKIVTEPGRLIVGNAGILVTEVVYVKDGGDK
TFVIVDGAMNDLIRPTLYEAYHEIRPVKISAASAPRIKADVVGPVCETGDYLALDREMAM
PKPGDLFAIGSAGAYGAVQAGTYNSRLLVPEVLVKGDRFHVIRPRRDYDELIGLDSVPDW
LD
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Lawrence Berkeley National Laboratory