SitesBLAST – Find functional sites

 

SitesBLAST

Comparing SMc01004 FitnessBrowser__Smeli:SMc01004 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 4 hits to proteins with known functional sites (download)

6j2lA Crystal structure of bi-functional enzyme (see paper)
45% identity, 63% coverage: 29:122/150 of query aligns to 16:107/200 of 6j2lA

query
sites
6j2lA
G
 
G
L
 
L
I
 
M
T
 
P
A
 
V
V
 
I
V
 
V
T
 
Q
D
 
H
A
 
A
R
 
V
D
 
S
G
 
G
E
 
E
L
 
V
L
 
L
M
 
M
V
 
L
A
 
G
H
 
Y
M
 
M
N
 
N
A
 
P
E
 
E
A
 
A
L
 
L
S
 
D
L
 
K
T
 
T
L
 
I
E
 
E
T
 
S
G
 
G
F
 
K
A
 
V
H
 
T
Y
 
F
Y
 
F
S
 
S
R
 
R
S
 
T
R
 
K
D
 
Q
R
 
R
L
 
L
W
 
W
K
 
I
K
 
K
G
 
G
E
 
E
S
 
T
S
 
S
G
 
G
N
 
N
L
 
F
Q
 
L
T
 
N
V
 
V
R
 
V
E
 
S
I
 
I
R
 
A
T
 
P
D
|
D
C
 
C
D
|
D
Q
 
N
D
|
D
A
 
T
V
 
L
W
 
L
L
 
V
K
 
L
V
 
A
S
 
N
V
 
P
A
 
I
G
 
G
H
 
-
D
 
-
A
 
P
T
 
T
C
|
C
H
 
H
T
 
K
G
 
G
R
 
T
R
 
S
S
 
S
C
|
C
F
 
F
Y
 
G
R
 
N
T
 
T

Sites not aligning to the query:

7bgnA Crystal structure of mthisn2-amp complex, a bifunctional enzyme from the histidine biosynthetic pathway (see paper)
39% identity, 67% coverage: 24:123/150 of query aligns to 10:107/204 of 7bgnA

query
sites
7bgnA
R
 
K
F
 
W
D
 
D
E
 
N
K
 
K
G
 
G
L
 
L
I
 
A
T
 
V
A
 
A
V
 
I
V
 
A
T
 
Q
D
 
N
A
 
V
R
 
D
D
 
T
G
 
G
E
 
A
L
 
I
L
 
L
M
 
M
V
 
Q
A
 
G
H
 
F
M
 
A
N
 
N
A
 
R
E
 
E
A
 
A
L
 
V
S
 
A
L
 
T
T
 
T
L
 
I
E
 
S
T
 
S
G
 
R
F
 
K
A
 
A
H
 
T
Y
 
F
Y
 
Y
S
 
S
R
 
R
S
 
S
R
 
R
D
 
S
R
 
S
L
 
L
W
|
W
K
 
T
K
|
K
G
|
G
E
 
E
S
x
T
S
|
S
G
 
N
N
 
N
L
 
F
Q
 
I
T
 
N
V
 
V
R
 
H
E
 
D
I
 
V
R
 
F
T
 
L
D
|
D
C
 
C
D
|
D
Q
 
R
D
|
D
A
 
S
V
 
I
W
 
-
L
 
-
K
 
-
V
 
I
S
 
Y
V
 
L
A
 
G
G
 
K
H
 
P
D
 
D
A
 
G
-
 
P
T
|
T
C
|
C
H
|
H
T
 
T
G
 
G
R
 
A
R
 
E
S
 
T
C
|
C
F
 
Y
Y
 
Y
R
 
T
T
 
P
V
 
V

Sites not aligning to the query:

7bgmA Crystal structure of mthisn2, a bifunctional enzyme from the histidine biosynthetic pathway (see paper)
39% identity, 67% coverage: 24:123/150 of query aligns to 12:109/213 of 7bgmA

query
sites
7bgmA
R
 
K
F
 
W
D
 
D
E
 
N
K
 
K
G
 
G
L
 
L
I
 
A
T
 
V
A
 
A
V
 
I
V
 
A
T
 
Q
D
 
N
A
 
V
R
 
D
D
 
T
G
 
G
E
 
A
L
 
I
L
 
L
M
 
M
V
 
Q
A
 
G
H
 
F
M
 
A
N
 
N
A
 
R
E
 
E
A
 
A
L
 
V
S
 
A
L
 
T
T
 
T
L
 
I
E
 
S
T
 
S
G
 
R
F
 
K
A
 
A
H
 
T
Y
 
F
Y
 
Y
S
 
S
R
 
R
S
 
S
R
 
R
D
 
S
R
 
S
L
 
L
W
 
W
K
 
T
K
 
K
G
 
G
E
 
E
S
 
T
S
 
S
G
 
N
N
 
N
L
 
F
Q
 
I
T
 
N
V
 
V
R
 
H
E
 
D
I
 
V
R
 
F
T
 
L
D
|
D
C
 
C
D
|
D
Q
 
R
D
|
D
A
 
S
V
 
I
W
 
-
L
 
-
K
 
-
V
 
I
S
 
Y
V
 
L
A
 
G
G
 
K
H
 
P
D
 
D
A
 
G
-
 
P
T
 
T
C
|
C
H
 
H
T
 
T
G
 
G
R
 
A
R
 
E
S
 
T
C
|
C
F
 
Y
Y
 
Y
R
 
T
T
 
P
V
 
V

Sites not aligning to the query:

6j2lB Crystal structure of bi-functional enzyme (see paper)
40% identity, 63% coverage: 29:122/150 of query aligns to 15:100/185 of 6j2lB

query
sites
6j2lB
G
 
G
L
 
L
I
 
M
T
 
P
A
 
V
V
 
I
V
 
V
T
 
Q
D
 
H
A
 
A
R
 
V
D
 
S
G
 
G
E
 
E
L
 
V
L
 
L
M
 
M
V
 
L
A
 
G
H
 
Y
M
 
M
N
 
N
A
 
P
E
 
E
A
 
A
L
 
L
S
 
D
L
 
K
T
 
T
L
 
I
E
 
E
T
 
S
G
 
G
F
 
K
A
 
V
H
 
T
Y
 
F
Y
 
F
S
 
S
R
 
R
S
 
T
R
 
K
D
 
Q
R
 
R
L
 
L
W
 
W
K
 
I
K
 
K
G
 
G
E
 
E
S
 
T
S
 
S
G
 
G
N
 
N
L
 
F
Q
 
L
T
 
N
V
 
V
R
 
V
E
 
S
I
 
I
R
 
A
T
 
P
D
|
D
C
 
C
D
|
D
Q
 
N
D
|
D
A
 
T
V
 
L
W
 
L
L
 
V
K
 
L
V
 
A
S
 
N
V
 
-
A
 
-
G
 
-
H
 
-
D
 
-
A
 
-
T
 
-
C
 
-
H
 
P
T
 
I
G
 
G
R
 
P
R
 
S
S
 
S
C
 
C
F
 
F
Y
 
G
R
 
N
T
 
T

Sites not aligning to the query:

Query Sequence

>SMc01004 FitnessBrowser__Smeli:SMc01004
MTLTFASPPQDKAELESGPAFTPRFDEKGLITAVVTDARDGELLMVAHMNAEALSLTLET
GFAHYYSRSRDRLWKKGESSGNLQTVREIRTDCDQDAVWLKVSVAGHDATCHTGRRSCFY
RTVGVADGEAKVAITDDHRHFDPAQIYAGN

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory