SitesBLAST – Find functional sites

 

SitesBLAST

Comparing SMc01141 FitnessBrowser__Smeli:SMc01141 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
31% identity, 94% coverage: 3:147/154 of query aligns to 502:648/650 of O31645

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O31645
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Sites not aligning to the query:

P46321 Probable licABCH operon regulator; EC 2.7.1.- from Bacillus subtilis (strain 168) (see paper)
30% identity, 69% coverage: 20:125/154 of query aligns to 514:615/641 of P46321

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P46321
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Sites not aligning to the query:

1j6tA Complex of enzyme iiamtl and the histidine-containing phosphocarrier protein hpr from escherichia coli nmr, restrained regularized mean structure (see paper)
24% identity, 71% coverage: 37:146/154 of query aligns to 33:142/144 of 1j6tA

query
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1j6tA
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Query Sequence

>SMc01141 FitnessBrowser__Smeli:SMc01141
MALAGLLHQNAIIPAMRANSKKQLLQELAAKASKLTGLPEREIFDVILQRERLGSTGVGN
GIAIPHGKLSNLPSIVGIFARLDAPVDFEALDDQPVDLVFLLLAPEGAGADHLKALSRIA
RVLRDHDMVSRIRASDSASAIYTLLSDDTTSHAA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory