Comparing SMc01627 FitnessBrowser__Smeli:SMc01627 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
34% identity, 91% coverage: 15:294/307 of query aligns to 3:277/285 of 7cagA
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
29% identity, 65% coverage: 52:250/307 of query aligns to 235:437/490 of 4ki0F
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
29% identity, 65% coverage: 52:250/307 of query aligns to 250:452/514 of P02916
P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
27% identity, 77% coverage: 17:252/307 of query aligns to 27:262/313 of P94529
>SMc01627 FitnessBrowser__Smeli:SMc01627
MASVTHSSPRGSRFRISKRALPYVLSLPALLVCIGILIPFFTAVIYSFQRYRLSQPWARQ
FNWGENYLNFFTDPGFWNTLKISLLYAGVTVTLELLLGLGIALLLQRRSTVNNFISIMLL
LPLMTAPALAALMWKLMTNPGFGILSYLASLVGLENFRWASSPDTALLTVVLVDIWVYTP
FIMILLLAGLRSLPTQPFEAAALDGVPRSFVFFRITLPMLTPYILTATLFRLLDSIQQFD
IIYAMTQGGPGDTLTVFQVEAYLNFFQSTNVGRSAALLIILWAITYALSNIFIKNWLRLR
ERARGEA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory