Comparing SMc01972 FitnessBrowser__Smeli:SMc01972 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 2 hits to proteins with known functional sites (download)
1y56B Crystal structure of l-proline dehydrogenase from p.Horikoshii (see paper)
22% identity, 81% coverage: 54:409/437 of query aligns to 20:363/374 of 1y56B
Sites not aligning to the query:
7cyxA Crystal strcuture of glycine oxidase from bacillus cereus atcc 14579 (see paper)
23% identity, 81% coverage: 40:395/437 of query aligns to 3:346/363 of 7cyxA
>SMc01972 FitnessBrowser__Smeli:SMc01972
MMARKQKSYAGDGSYPASYYAASRNIIRNPVKLEGRIETDICIVGAGYSGLSTAIHLAEK
GYKVTVVEGAQVGWGASGRNGGQIVNGLNAGLSTIERRYGEDAARFIGGLVQEGGRIIRR
LVSQYRIDCDLKPGNIYAAYTGAHMKELEAKQALWRKYGMDDHQLLDREALRKLVNSEAY
CGGMLDTTGGHMHPLNLVLGEARAFESLGGVIYEMSPVTRVDHESARPTVHTDGGEVSAR
IVVLCGNAYLGDAVPKLATRVMPVSTQMITTAPLGEELAHSLIPSDMCVEDVRYILDYFR
LSADKRMIFGGGTVYGGTDPADVVAKLRPNLEKVFPRLKGVKIDYAWSGNFALSFTRVPQ
MGRIGSNTYFAHGYSGHGVTGSHLFGRTLAEAIDGDVSRFDVFAKLPWYPFPGGRMFRAQ
YSTVGSWWYMLKDAVGW
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory