Comparing SMc02260 FitnessBrowser__Smeli:SMc02260 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
61% identity, 87% coverage: 35:280/284 of query aligns to 7:253/258 of P02915
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
61% identity, 87% coverage: 35:281/284 of query aligns to 3:250/258 of 1b0uA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
54% identity, 88% coverage: 35:283/284 of query aligns to 2:239/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
51% identity, 88% coverage: 33:283/284 of query aligns to 2:241/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
51% identity, 88% coverage: 33:283/284 of query aligns to 2:241/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
51% identity, 88% coverage: 33:283/284 of query aligns to 2:241/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
51% identity, 88% coverage: 33:283/284 of query aligns to 2:241/242 of 2oljA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
52% identity, 88% coverage: 35:283/284 of query aligns to 3:239/241 of 4u00A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
39% identity, 86% coverage: 40:282/284 of query aligns to 11:243/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
39% identity, 86% coverage: 40:282/284 of query aligns to 12:244/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
39% identity, 86% coverage: 40:282/284 of query aligns to 12:244/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
39% identity, 86% coverage: 40:282/284 of query aligns to 12:244/344 of 6cvlD
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
40% identity, 75% coverage: 47:258/284 of query aligns to 20:220/226 of 5xu1B
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
38% identity, 75% coverage: 32:243/284 of query aligns to 1:202/223 of 2pclA
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
33% identity, 92% coverage: 22:282/284 of query aligns to 14:265/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
33% identity, 92% coverage: 22:282/284 of query aligns to 14:265/382 of 7aheC
Sites not aligning to the query:
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
37% identity, 80% coverage: 37:263/284 of query aligns to 7:226/650 of 5ws4A
7ahdC Opua (e190q) occluded (see paper)
33% identity, 90% coverage: 22:277/284 of query aligns to 14:260/260 of 7ahdC
Sites not aligning to the query:
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
38% identity, 76% coverage: 47:263/284 of query aligns to 21:226/648 of P75831
8g4cB Bceabs atpgs high res tm (see paper)
32% identity, 77% coverage: 43:261/284 of query aligns to 16:224/248 of 8g4cB
Sites not aligning to the query:
>SMc02260 FitnessBrowser__Smeli:SMc02260
MLHERKTRGTVFHGFNERSANERSRAPMTDAAQAIAVTDLHKRFGPLEVLKGVSLSARQG
DVIAIIGGSGSGKSTLLRCINMLELPSAGQISVHGEEIRMKPDGHGGLMPADRKQVQRIR
TQLGMVFQSFNLWQHMTILQNVIEAPVHVLGKTKAEAVETAEALLRRVGLYEKRDAYPAF
LSGGQQQRAAIARALAIQPLVMLFDEPTSALDPELVGEVLSVIGDLAREERTMVLVTHEM
KFARDVANHIVFLHNGVIEEQGPPEAIFGAPKSERLKKFISSIH
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory