SitesBLAST – Find functional sites

 

SitesBLAST

Comparing SMc02835 FitnessBrowser__Smeli:SMc02835 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1sz2B Crystal structure of e. Coli glucokinase in complex with glucose (see paper)
36% identity, 91% coverage: 14:323/339 of query aligns to 5:313/320 of 1sz2B

query
sites
1sz2B
L
 
L
I
 
V
G
 
G
D
 
D
I
 
V
G
 
G
G
 
G
T
 
T
N
 
N
A
 
A
R
 
R
F
 
L
A
 
A
L
 
L
L
 
C
T
 
D
D
 
I
A
 
A
Y
 
S
G
 
G
E
 
E
P
 
I
K
 
S
Q
 
Q
L
 
A
A
 
K
P
 
T
I
 
Y
R
 
S
T
 
G
G
 
L
D
 
D
F
 
Y
A
 
P
T
 
S
I
 
L
E
 
E
E
 
-
A
 
A
M
 
V
Q
 
I
K
 
R
G
 
V
I
 
Y
L
 
L
D
 
E
K
 
E
T
 
H
S
 
K
V
 
V
Q
 
E
P
 
V
R
 
K
S
 
D
A
 
G
I
 
C
L
 
I
A
 
A
V
 
I
A
 
A
G
x
C
P
|
P
I
 
I
K
 
T
G
 
G
D
 
D
E
 
W
I
 
V
P
 
A
L
 
M
T
 
T
N
 
N
A
 
H
G
 
T
W
 
W
V
 
A
I
 
F
R
 
S
P
 
I
K
 
A
D
 
E
M
 
M
L
 
K
A
 
K
G
 
N
L
 
L
G
 
G
L
 
F
E
 
S
D
 
H
V
 
L
L
 
E
V
 
I
I
 
I
N
|
N
D
|
D
F
 
F
E
 
T
A
 
A
Q
 
V
A
 
S
L
 
M
A
 
A
I
 
I
A
 
P
A
 
M
P
 
L
A
 
K
D
 
K
Q
 
E
D
 
H
V
 
L
V
 
I
Q
 
Q
I
 
F
G
 
G
G
 
G
G
 
A
A
 
E
V
 
P
R
 
V
P
 
E
F
 
G
H
 
K
S
 
P
R
 
I
V
 
A
V
 
V
L
 
Y
G
 
G
P
 
A
G
 
G
T
 
T
G
 
G
L
|
L
G
|
G
V
 
V
A
 
A
G
 
H
L
 
L
V
 
V
Y
 
H
A
 
V
Q
 
D
H
 
K
T
 
R
W
 
W
I
 
V
P
 
S
V
 
L
P
 
P
G
 
G
E
|
E
G
 
G
G
 
G
H
|
H
V
 
V
D
 
D
I
 
F
G
 
A
P
 
P
R
 
N
T
 
S
E
 
E
R
 
E
D
 
E
F
 
A
R
 
I
I
 
I
W
 
L
P
 
E
F
 
I
L
 
L
E
 
R
P
 
A
I
 
E
E
 
I
G
 
G
R
 
H
M
 
V
A
 
S
G
 
A
E
|
E
Q
 
R
I
 
V
L
 
L
C
 
S
G
 
G
R
 
P
G
 
G
I
 
L
M
 
V
N
 
N
L
 
L
Y
 
Y
R
 
R
A
 
A
V
 
I
C
 
V
A
 
K
A
 
A
N
 
D
G
 
N
E
 
R
E
 
L
A
 
P
V
 
E
L
 
N
A
 
L
D
 
K
Q
 
P
A
 
K
A
 
D
V
 
I
T
 
T
T
 
E
S
 
R
A
 
A
L
 
L
S
 
A
G
 
D
A
 
S
D
 
C
A
 
T
A
 
D
A
 
C
V
 
R
E
 
R
T
 
A
V
 
L
S
 
S
L
 
L
F
 
F
A
 
C
T
 
V
Y
 
I
L
 
M
G
 
G
R
 
R
V
 
F
A
 
G
G
 
G
D
 
N
M
 
L
A
 
A
L
 
L
I
 
N
F
 
L
M
 
G
A
 
T
R
 
F
G
 
G
G
 
G
V
 
V
F
 
F
L
 
I
A
 
A
G
 
G
G
 
G
I
 
I
S
 
V
Q
 
P
K
 
R
I
 
F
L
 
L
P
 
E
A
 
F
L
 
F
T
 
K
K
 
A
P
 
S
E
 
G
F
 
F
R
 
R
A
 
A
A
 
A
F
 
F
E
 
E
D
 
D
K
 
K
A
 
G
P
 
R
H
 
F
S
 
K
A
 
E
L
 
Y
M
 
V
R
 
H
T
 
D
I
 
I
P
 
P
T
 
V
F
 
Y
A
 
L
V
 
I
I
 
V
H
 
H
P
 
D
M
 
N
A
 
P
A
 
G
L
 
L
S
 
L
G
 
G
L
 
S
A
 
G
A
 
A
F
 
H
A
 
L
R
 
R

Query Sequence

>SMc02835 FitnessBrowser__Smeli:SMc02835
MPNASEHSFPFPILIGDIGGTNARFALLTDAYGEPKQLAPIRTGDFATIEEAMQKGILDK
TSVQPRSAILAVAGPIKGDEIPLTNAGWVIRPKDMLAGLGLEDVLVINDFEAQALAIAAP
ADQDVVQIGGGAVRPFHSRVVLGPGTGLGVAGLVYAQHTWIPVPGEGGHVDIGPRTERDF
RIWPFLEPIEGRMAGEQILCGRGIMNLYRAVCAANGEEAVLADQAAVTTSALSGADAAAV
ETVSLFATYLGRVAGDMALIFMARGGVFLAGGISQKILPALTKPEFRAAFEDKAPHSALM
RTIPTFAVIHPMAALSGLAAFARTPRDFGVAMEGRRWRR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory