SitesBLAST – Find functional sites

 

SitesBLAST

Comparing SMc03002 FitnessBrowser__Smeli:SMc03002 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 5 hits to proteins with known functional sites (download)

2qlxA Crystal structure of rhamnose mutarotase rhau of rhizobium leguminosarum in complex with l-rhamnose (see paper)
64% identity, 99% coverage: 1:103/104 of query aligns to 5:107/108 of 2qlxA

query
sites
2qlxA
M
 
L
E
 
E
K
 
K
Y
 
H
A
 
A
F
 
F
R
 
K
M
|
M
R
 
Q
L
 
L
H
 
N
P
 
P
G
 
G
K
 
M
A
 
E
A
 
A
E
 
E
Y
|
Y
Q
 
R
A
 
K
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R
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D
A
 
E
I
 
I
W
 
W
P
 
P
E
 
E
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L
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D
L
 
L
L
 
L
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H
D
 
Q
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S
G
 
G
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A
S
 
S
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D
Y
|
Y
S
 
S
I
 
I
H
 
H
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L
D
 
D
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R
E
 
E
N
 
T
C
 
N
L
 
T
L
 
L
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F
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G
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V
L
 
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P
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D
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M
G
 
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D
 
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L
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W
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A
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M
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A
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N
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D
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D
L
 
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T
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L
F
 
F
H
 
H
L
 
M

2qlwB Crystal structure of rhamnose mutarotase rhau of rhizobium leguminosarum (see paper)
64% identity, 99% coverage: 1:103/104 of query aligns to 5:107/108 of 2qlwB

query
sites
2qlwB
M
 
L
E
 
E
K
 
K
Y
 
H
A
 
A
F
 
F
R
 
K
M
 
M
R
 
Q
L
 
L
H
 
N
P
 
P
G
 
G
K
 
M
A
 
E
A
 
A
E
 
E
Y
 
Y
Q
 
R
A
 
K
R
 
R
H
 
H
D
 
D
A
 
E
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
V
 
V
T
 
D
L
 
L
L
 
L
K
 
H
D
 
Q
A
 
S
G
 
G
V
 
A
S
 
S
D
 
D
Y
 
Y
S
 
S
I
 
I
H
 
H
L
 
L
D
 
D
E
 
R
E
 
E
N
 
T
C
 
N
L
 
T
L
 
L
F
 
F
G
 
G
V
 
V
L
 
L
W
 
T
R
 
R
S
 
P
D
 
K
D
 
D
H
 
H
R
 
T
M
 
M
G
 
A
D
 
S
L
 
L
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P
S
 
D
H
 
H
P
 
P
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V
M
 
M
R
 
K
K
 
K
W
 
W
W
 
W
A
 
A
H
 
H
M
 
M
A
|
A
D
 
D
I
 
I
M
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M
E
 
A
T
|
T
R
 
N
A
 
P
D
 
D
N
 
N
E
 
S
P
 
P
V
 
V
A
 
Q
V
 
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D
L
 
L
K
 
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T
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L
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F
H
 
H
L
 
M

1x8dA Crystal structure of e. Coli yiil protein containing l-rhamnose (see paper)
40% identity, 99% coverage: 1:103/104 of query aligns to 1:103/104 of 1x8dA

query
sites
1x8dA
M
 
M
E
 
I
K
 
R
Y
 
K
A
 
A
F
 
F
R
 
V
M
 
M
R
 
Q
L
 
V
H
 
N
P
 
P
G
 
D
K
 
A
A
 
H
A
 
E
E
 
E
Y
|
Y
Q
 
Q
A
 
R
R
 
R
H
|
H
D
 
N
A
 
P
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
V
 
E
T
 
A
L
 
V
L
 
L
K
 
K
D
 
S
A
 
H
G
 
G
V
 
A
S
 
H
D
 
N
Y
|
Y
S
 
A
I
 
I
H
 
Y
L
 
L
D
 
D
E
 
K
E
 
A
N
 
R
C
 
N
L
 
L
L
 
L
F
 
F
G
 
A
V
 
M
L
 
V
W
 
E
R
 
I
S
 
E
D
 
S
D
 
E
H
 
E
R
 
R
M
 
W
G
 
N
D
 
A
L
 
V
P
 
A
S
 
S
H
 
T
P
 
D
V
 
V
M
 
C
R
 
Q
K
 
R
W
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W
W
|
W
A
 
K
H
 
Y
M
 
M
A
 
T
D
 
D
I
 
V
M
 
M
E
 
P
T
 
A
R
 
N
A
 
P
D
 
D
N
 
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E
 
S
P
 
P
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V
A
 
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E
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F
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Y
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L

P32156 L-rhamnose mutarotase; Rhamnose 1-epimerase; Type-3 mutarotase; EC 5.1.3.32 from Escherichia coli (strain K12) (see paper)
40% identity, 99% coverage: 1:103/104 of query aligns to 1:103/104 of P32156

query
sites
P32156
M
 
M
E
 
I
K
 
R
Y
 
K
A
 
A
F
 
F
R
 
V
M
 
M
R
 
Q
L
 
V
H
 
N
P
 
P
G
 
D
K
 
A
A
 
H
A
 
E
E
 
E
Y
|
Y
Q
 
Q
A
 
R
R
 
R
H
 
H
D
 
N
A
 
P
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
V
 
E
T
 
A
L
 
V
L
 
L
K
 
K
D
 
S
A
 
H
G
 
G
V
 
A
S
 
H
D
 
N
Y
 
Y
S
 
A
I
 
I
H
 
Y
L
 
L
D
 
D
E
 
K
E
 
A
N
 
R
C
 
N
L
 
L
L
 
L
F
 
F
G
 
A
V
 
M
L
 
V
W
 
E
R
 
I
S
 
E
D
 
S
D
 
E
H
 
E
R
 
R
M
 
W
G
 
N
D
 
A
L
 
V
P
 
A
S
 
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H
 
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P
 
D
V
 
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M
 
C
R
 
Q
K
 
R
W
 
W
W
 
W
A
 
K
H
 
Y
M
 
M
A
 
T
D
 
D
I
 
V
M
 
M
E
 
P
T
 
A
R
 
N
A
 
P
D
 
D
N
 
N
E
 
S
P
 
P
V
 
V
A
 
S
V
 
S
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E
L
 
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Q
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V
 
V
F
 
F
H
 
Y
L
 
L

7bywA Crystal structure of acidovorax avenae l-fucose mutarotase (l-fucose- bound form) (see paper)
31% identity, 90% coverage: 10:103/104 of query aligns to 9:107/108 of 7bywA

query
sites
7bywA
L
 
I
H
 
K
P
 
P
G
 
E
K
 
H
A
 
I
A
 
D
E
 
E
Y
|
Y
Q
 
K
A
 
R
R
 
L
H
|
H
D
 
A
A
 
A
I
 
V
W
 
W
P
 
P
E
 
A
L
 
V
V
 
L
T
 
A
L
 
R
L
 
L
K
 
A
D
 
E
A
 
A
G
 
H
V
 
V
S
 
R
D
 
N
Y
|
Y
S
 
S
I
 
I
H
 
F
L
 
L
D
 
R
E
 
E
E
 
P
N
 
E
C
 
N
L
 
L
L
 
L
F
 
F
G
 
G
V
 
Y
L
 
W
-
 
E
W
 
Y
R
 
H
S
 
G
D
 
T
D
 
D
H
 
Y
R
 
A
-
 
A
-
 
D
M
 
M
G
 
E
D
 
A
L
 
I
P
 
A
S
 
Q
H
 
D
P
 
P
V
 
E
M
 
T
R
 
R
K
 
R
W
|
W
W
|
W
A
 
T
H
 
F
M
 
C
A
 
G
D
 
P
I
 
C
M
 
Q
E
 
E
T
 
P
R
 
L
A
 
A
D
 
S
N
 
R
E
 
Q
P
 
P
V
 
G
A
 
E
-
 
H
-
 
W
V
 
A
P
 
H
L
 
M
K
 
E
T
 
E
V
 
V
F
 
F
H
 
H
L
 
V

Query Sequence

>SMc03002 FitnessBrowser__Smeli:SMc03002
MEKYAFRMRLHPGKAAEYQARHDAIWPELVTLLKDAGVSDYSIHLDEENCLLFGVLWRSD
DHRMGDLPSHPVMRKWWAHMADIMETRADNEPVAVPLKTVFHLK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory