Comparing SMc03132 FitnessBrowser__Smeli:SMc03132 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
7cyxA Crystal strcuture of glycine oxidase from bacillus cereus atcc 14579 (see paper)
23% identity, 85% coverage: 28:390/426 of query aligns to 3:353/363 of 7cyxA
Q9UI17 Dimethylglycine dehydrogenase, mitochondrial; ME2GLYDH; EC 1.5.8.4 from Homo sapiens (Human) (see 4 papers)
24% identity, 88% coverage: 18:392/426 of query aligns to 37:426/866 of Q9UI17
Sites not aligning to the query:
>SMc03132 FitnessBrowser__Smeli:SMc03132
MSYPNTYYKQTIAETNVRPPLSGTVECDTVIIGGGLAGLTTALQLARAGQSVVVLEAESV
GFGASGRNGGFVSPGFATGSDNIARMAGTEAARQIHRLSIEGVEFVRETIEALKIDGARP
QPGITSVLRYDDGGSLKAHADEMRRIYGYELDYLSTGEVRSVLKSNRYFHALRDPKAFHM
HPLNYLRGLAREIERLGGRIYEGSAATGSVLDGAEKTVSTSGGRVRARHVVFTTGGYTGP
LNGRLKRSFLPIATYVMLSEEAPELIRTAIATTDAIGDNRRAGDYYRLVEGGKRLLWGGR
ITTRAASPAALAGELRREMVGTYPQLKDLKTELAWSGLMSYARHLMPQIGEMQPGVWHCT
AFGGHGLNTTAIGGKLVAEGILGQSDRYKLFKPFGLVWAGGYAGLAVAQLTYWKLQAQDW
WRERAA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory