Comparing SMc03839 FitnessBrowser__Smeli:SMc03839 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
P0AAC6 Modulator of FtsH protease YccA from Escherichia coli (strain K12) (see 2 papers)
35% identity, 45% coverage: 131:241/245 of query aligns to 113:214/219 of P0AAC6
Sites not aligning to the query:
>SMc03839 FitnessBrowser__Smeli:SMc03839
MADLRNYQTRMSPAGAQAGAVIDEGLRAYMLKVYNLMALGLAITGVAAYGTYALAASNPA
FAQLIYASPLKWVVMLAPLALVFFLSFRINSMSVSAAQTTFWVYAALMGLSLSSIFLVFT
GQSIVQTFFVTAASFGALSLYGYTTKKDLSGLGSFLIMGLFGVIIASVVNIFLASSALGF
AISVIGVLIFAGLTAYDTQKLKEMYFEGDDALVAGRKAIMGALTLYLDFINLFMFMLQFL
GNKNE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory