Comparing SMc03865 SMc03865 amino-acid transport system permease ABC transporter protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
40% identity, 81% coverage: 47:268/273 of query aligns to 16:215/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
40% identity, 81% coverage: 47:267/273 of query aligns to 16:214/214 of 4ymwC
>SMc03865 SMc03865 amino-acid transport system permease ABC transporter protein
MTPVQSSDTSGKDDYPWWLIALLVIAAALAAVIAANDIFTQVFTVVLKGLGVTVFVTLVG
FVLATVLGLGVALMALSEHVVLRQIARFYTEVIRGVPILVLLFYIAFVGAPALVTVANFV
AAPLISAGWIEPFVVRDVSLMWRAIMALMIGYSAFIAEVFRAGIQSVDKGQVEAAKALGL
SRYQRFRLVVFPQAIRVILPPLGNDFVAMVKDSSLVSVLGVADITQMGKVYASGSFRFFE
TYSIVAYVYLVLTIGLSLALRAVERRLRRSQVR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory