Comparing SMc04085 FitnessBrowser__Smeli:SMc04085 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
Q54VI3 Glutamate dehydrogenase 2; NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Dictyostelium discoideum (Social amoeba) (see paper)
24% identity, 40% coverage: 666:1303/1595 of query aligns to 422:1023/1042 of Q54VI3
>SMc04085 FitnessBrowser__Smeli:SMc04085
MGVKHNPKRDRHIDAARAAGSRFGAETLPPEILFGGASNDDLDRYTPEMLALTAAHARGE
LARWDGGKPQVSVETVAGVAPGGIEVSIIAITERNMPFLYDSVMGEVTSTHRDIHLAIHP
ILVMEPGKPVKLFDPDEESAPEHRVSHIQIHLSRLTPLEARSLSKRISDVLEQVHQAVHD
WPAMTALLDQAMRELEDYNASRKKSDRDEALAFLRWLRDSNFTFLGMREYTYSGKGGRAT
VERGKGRGLGILSNPDVRVLRQGKDAVLTTPEILAFLEGPDFLIVTKANVKSVVHRRAHM
DYIGIKRFDASGNVVGELRIVGLFTSTAYTRQASEIPLLRHKIEKIVDHFGYDPQSHSGK
TLANTLEAYPRDDLFQIDVGLLAAFCEQINELGDRPRVRVLPRIDHFDRFVSVIVFVPRE
QYDSDVREKIGDYLKTVYDGRVSAYYPAFPEGGLARVHFIIGRSGGKTPRVPQAKLEEAV
RAIVTRWIDRFNLLARKEGTEISVGEAYQAAFTPAEAYADLGDIAACTAGDPIRISFYHR
HQERPDTLELKIFHADTPVSLSRRVPLLENLGFRVISEQTYDIGVHVHGDEPREVVLHDM
ELIHRDGHTLNLARIGPALEEAFLAAWNGTTEDDNFNRLVLLAGLTAREITVLRAYARYL
RQAGITYSQGYIADTLNKYPTIAADIFRLFSTRMDPTTEVKARTKKCSALLTGIEEALSA
VPSLDEDRILRRYVNAVQSTLRTNYFQKDAEGRPRAVLAFKLDPKQLEGLPEPRPFREIF
VYGTEVEGVHLRFGKVARGGLRWSDRAQDYRTEVLGLVKAQQVKNAVIVPVGAKGGFYPK
QLPVGGSRDEIFKAGTEAYKTYIRTLLSVTDNIIGQEVVPPEDTLRLDGDDPYFVVAADK
GTATFSDTANALAQEADFWLDDAFASGGSAGYDHKKMGITGRGAWEAVKRHFREMDVDIQ
TTPFTVAGVGDMSGDVFGNGMLLSEKIRLIAAFDHRDIFIDPEPDIDLSFGERKRMFALP
RSSWQDYDRKALSPGAMIISRSEKLVTLTPEAMAAIGIDKPKATPFEIMSAILKSPVDLL
WFGGIGTYVRGANETDAEVGDRANDAIRVSAEDVRARVIGEGANLGVTQKGRIGFSLNGG
RCNSDAIDNSAGVNSSDVEVNIKIALASAMRDDRLTRPKRNTLLASMTDEVGHLVLRNNY
QQSLAISLTEMQGLANRTPLARLMARLEADGHLNRKVETLPTDQAMSERYQAGRPLTRPE
IGVLLSYAKLVLFDELIVSEIPDDPYFTATLERYFPAKMRKAYAGDIHGHRLRREIIATV
LANETINRGGPAFVSTLTDATGFLSADVVKAAVLALDGFDLPRIYGEIDALDNRISGAIQ
NRLYHEVGRIFALVAERALRTRASEGSVAEAVARLRDGLQKLRGTMRAAISREGAEEARL
RAAGFIENGVSAKLAKEIAELSLMTLVPEIMQIATVTGEPLSRTAQAYFTVTESLRINRL
LAAADRVPATEQFESMALSRAVGDIGTARRDITIAALVEHKGDRNPVLAWQDRDRQRVAT
VGDQLRLLTEKGETTLAKVTVAAGLLSDLARGWTK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory