Comparing SMc04136 FitnessBrowser__Smeli:SMc04136 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
29% identity, 84% coverage: 26:289/315 of query aligns to 26:288/313 of P94529
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
31% identity, 75% coverage: 72:308/315 of query aligns to 260:510/514 of P02916
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
32% identity, 72% coverage: 72:297/315 of query aligns to 245:484/490 of 4ki0F
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
27% identity, 83% coverage: 38:298/315 of query aligns to 16:270/285 of 7cagA
>SMc04136 FitnessBrowser__Smeli:SMc04136
MQDTAVAVGTGASSRPAAQGRLARIWASHGAGYMFLLPWLIGFFGLTLGPAIASLYLSFT
NFDLIRAPEWIGTANYARIATADPKFAAAVKVTFLYVVLSVPFKLAFALLVAILLDRGVR
GLTVYRAIFYLPSLLGGSVAIAVLWRQLFAGDGLINSLLAQFGIEGPSWISHPDYSIWTL
VVLSVWQFGSPMIIFLAGLRQIPTDMYEAASLDGASKFRQFYKITLPLLTPVIFFNAVVQ
TIDAFKAFTPAFIISGGTGGPINSTLFYTLYLYQEAFGNFRMGYASALAWILVLIIGLFT
AFSFLTSRYWVHYDD
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory