Comparing SMc04257 FitnessBrowser__Smeli:SMc04257 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
25% identity, 94% coverage: 19:305/305 of query aligns to 4:281/281 of P94530
P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
22% identity, 96% coverage: 13:305/305 of query aligns to 3:296/296 of P68183
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
34% identity, 24% coverage: 167:239/305 of query aligns to 355:427/490 of 4ki0F
Sites not aligning to the query:
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
34% identity, 24% coverage: 167:239/305 of query aligns to 370:442/514 of P02916
Sites not aligning to the query:
>SMc04257 FitnessBrowser__Smeli:SMc04257
MAAAYETAPGGPMAGPRGRKPRRTLSRRNIIVYGTLIVVALYYLLPLYVMIVTSLKGMPE
IRVGNIFAPPLEITFEPWVKAWAEACTGLNCDGLSRGFWNSVRITVPSVIISIAIASVNG
YALANWRFKGADLFFTILIVGAFIPYQVMIYPIVIVLREMGVYGTLTGLIIVHTIFGMPI
LTLLFRNYFAGLPEELFKAARVDGAGFWTIYFKIMLPMSLPIFVVAMILQVTGIWNDFLF
GVVFTRPEYYPMTVQLNNIVNSVQGVKEYNVNMAATILTGLVPLTVYFVSGRLFVRGIAA
GAVKG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory