Comparing SMc04407 FitnessBrowser__Smeli:SMc04407 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
Q9Y7Q9 Probable metabolite transporter C2H8.02 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
27% identity, 35% coverage: 13:233/629 of query aligns to 32:264/583 of Q9Y7Q9
Sites not aligning to the query:
O42885 Putative inorganic phosphate transporter C8E4.01c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
28% identity, 35% coverage: 15:235/629 of query aligns to 40:277/572 of O42885
Sites not aligning to the query:
Q09852 Putative inorganic phosphate transporter C23D3.12 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
29% identity, 26% coverage: 66:231/629 of query aligns to 92:264/559 of Q09852
Sites not aligning to the query:
Q8NLB7 Gentisate transporter from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) (see paper)
25% identity, 33% coverage: 31:236/629 of query aligns to 52:239/444 of Q8NLB7
Sites not aligning to the query:
P25297 Inorganic phosphate transporter PHO84 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
23% identity, 49% coverage: 18:324/629 of query aligns to 61:428/587 of P25297
Sites not aligning to the query:
8fvzA Pipt y150a
24% identity, 49% coverage: 19:327/629 of query aligns to 2:318/433 of 8fvzA
Sites not aligning to the query:
Q12300 High glucose sensor RGT2; Low-affinity glucose receptor RGT2; Low-affinity transporter-like sensor RGT2; Restores glucose transport protein 2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
24% identity, 42% coverage: 58:321/629 of query aligns to 141:426/763 of Q12300
Sites not aligning to the query:
P36035 Carboxylic acid transporter protein homolog from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
23% identity, 24% coverage: 73:226/629 of query aligns to 186:325/616 of P36035
Sites not aligning to the query:
>SMc04407 FitnessBrowser__Smeli:SMc04407
MANVVTAGGTKAGPMTGEEKKVIFASSLGTVFEWYDFYLYGSLAVYIGATFFSQYPETTR
NIFALLAFAAGFLVRPFGALVFGRLGDLVGRKYTFLVTILIMGVSTFLVGVLPGAASIGI
AAPIILIALRLLQGLALGGEYGGAATYVAEHAPHGRRGYFTSWIQTTATLGLFLSLVVIL
LVQYMLGKEAFAEWGWRIPFLLSFVLLGVSVWIRLKMNESPAFKKMKEEGKGSKAPLTEA
FGQWRNAKIAVLALFGAVVGQAVVWYSGQFYALFFLQSILKVDGQSANLMVAASLLLGTG
FFVFFGWLSDKIGRKPIIMAGLLLAMLTYFPLFKALTWAGNPALAEAQQSVRATVTAAPG
DCKFQFNPTGTAKFTTSCDIATAFLTKNSVPYDVVTTAAAGTPATVKIGETTITSYDAIA
AGDRAKAEEAAFGKQINMALQASGYPLVRGAAKVPESKLDAFVAANPELGLDAAAVRAGE
KTMVPADKLVADKLLTQEEVGSATEMAVYNIDKGGAFTMVADPARVNWTVIIAVLTVLVI
YVTMVYGPIAALLVELFPTRIRYTGMSLPYHIGNGWFGGLLPATAFAMSAAKGDIYYGLW
YPIVFAGITLVIGLLFLPETKDRDIHTME
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory