SitesBLAST – Find functional sites

 

SitesBLAST

Comparing SO3965 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 13 hits to proteins with known functional sites (download)

Q84F84 Phosphocarrier protein HPr; Histidine-containing protein from Lysinibacillus sphaericus (Bacillus sphaericus) (see paper)
37% identity, 86% coverage: 6:83/91 of query aligns to 4:81/88 of Q84F84

query
sites
Q84F84
R
 
Q
Q
 
Q
V
 
F
T
 
T
I
 
V
C
 
I
N
 
D
K
 
P
L
 
L
G
 
G
L
 
I
H
|
H
A
 
A
R
 
R
A
 
P
A
 
A
T
 
S
K
 
Q
L
 
L
V
 
V
V
 
A
L
 
K
A
 
A
S
 
T
E
 
P
F
 
F
D
 
A
A
 
S
S
 
A
I
 
I
T
 
E
L
 
V
I
 
R
Q
 
T
G
 
E
E
 
E
K
 
K
Q
 
A
A
 
A
S
 
N
A
 
L
A
 
K
S
|
S
V
 
I
L
 
L
G
 
G
L
 
V
L
 
M
M
 
G
L
 
L
E
 
A
T
 
L
G
 
K
M
 
Q
G
 
G
K
 
S
T
 
Q
I
 
F
T
 
T
L
 
L
I
 
Y
A
 
V
E
 
E
G
 
G
P
 
E
D
 
D
A
 
E
E
 
D
P
 
Q
A
 
A
L
 
F
N
 
E
A
 
A
I
 
L
C
 
A
A
 
T
L
 
L
I
 
L

Q9CJ83 Phosphocarrier protein HPr; Histidine-containing protein from Lactococcus lactis subsp. lactis (strain IL1403) (Streptococcus lactis) (see paper)
39% identity, 82% coverage: 6:80/91 of query aligns to 4:78/88 of Q9CJ83

query
sites
Q9CJ83
R
 
K
Q
 
E
V
 
F
T
 
H
I
 
I
C
 
V
N
 
V
K
 
E
L
 
T
G
 
G
L
 
I
H
 
H
A
 
A
R
 
R
A
 
P
A
 
A
T
 
T
K
 
L
L
 
L
V
 
V
V
 
H
L
 
T
A
 
A
S
 
S
E
 
K
F
 
F
D
 
T
A
 
S
S
 
E
I
 
I
T
 
T
L
 
L
I
 
E
Q
 
Y
G
 
K
E
 
G
K
 
K
Q
 
S
A
 
V
S
 
N
A
 
L
A
 
K
S
|
S
V
 
I
L
 
M
G
 
G
L
 
V
L
 
M
M
 
S
L
 
L
E
 
G
T
 
V
G
 
G
M
 
Q
G
 
G
K
 
A
T
 
D
I
 
V
T
 
T
L
 
I
I
 
S
A
 
A
E
 
E
G
 
G
P
 
A
D
 
D
A
 
A
E
 
D
P
 
D
A
 
A
L
 
I
N
 
S
A
 
T
I
 
I
C
 
A

P37349 PEP-dependent dihydroxyacetone kinase, phosphoryl donor subunit DhaM; Dihydroxyacetone kinase subunit M; EC 2.7.1.121 from Escherichia coli (strain K12) (see paper)
38% identity, 90% coverage: 8:89/91 of query aligns to 160:241/472 of P37349

query
sites
P37349
V
 
V
T
 
V
I
 
I
C
 
K
N
 
N
K
 
R
L
 
N
G
 
G
L
 
L
H
|
H
A
 
V
R
 
R
A
 
P
A
 
A
T
 
S
K
 
R
L
 
L
V
 
V
V
 
Y
L
 
T
A
 
L
S
 
S
E
 
T
F
 
F
D
 
N
A
 
A
S
 
D
I
 
M
T
 
L
L
 
L
I
 
E
Q
 
K
G
 
N
E
 
G
K
 
K
Q
 
C
A
 
V
S
 
T
A
 
P
A
 
E
S
 
S
V
 
I
L
 
N
G
 
Q
L
 
I
L
 
A
M
 
L
L
 
L
E
 
Q
T
 
V
G
 
R
M
 
Y
G
 
N
K
 
D
T
 
T
I
 
L
T
 
R
L
 
L
I
 
I
A
 
A
E
 
K
G
 
G
P
 
P
D
 
E
A
 
A
E
 
E
P
 
E
A
 
A
L
 
L
N
 
I
A
 
A
I
 
F
C
 
R
A
 
Q
L
 
L
I
 
A
D
 
E
A
 
D
K
 
N
F
 
F
D
 
G
E
 
E

Sites not aligning to the query:

P24366 Phosphocarrier protein HPr; Histidine-containing protein from Streptococcus salivarius (see paper)
40% identity, 82% coverage: 6:80/91 of query aligns to 4:78/87 of P24366

query
sites
P24366
R
 
K
Q
 
D
V
 
F
T
 
H
I
 
I
C
 
V
N
 
A
K
 
E
L
 
T
G
 
G
L
 
I
H
 
H
A
 
A
R
 
R
A
 
P
A
 
A
T
 
T
K
 
L
L
 
L
V
 
V
V
 
Q
L
 
T
A
 
A
S
 
S
E
 
K
F
 
F
D
 
A
A
 
S
S
 
D
I
 
I
T
 
T
L
 
L
I
 
D
Q
 
Y
G
 
K
E
 
G
K
 
K
Q
 
A
A
 
V
S
 
N
A
 
L
A
 
K
S
|
S
V
 
I
L
 
M
G
 
G
L
 
V
L
 
M
M
 
S
L
 
L
E
 
G
T
 
V
G
 
G
M
 
Q
G
 
G
K
 
A
T
 
D
I
 
V
T
 
T
L
 
I
I
 
S
A
 
A
E
 
E
G
 
G
P
 
A
D
 
D
A
 
A
E
 
D
P
 
D
A
 
A
L
 
I
N
 
V
A
 
A
I
 
I
C
 
A

O69250 Phosphocarrier protein HPr; Histidine-containing protein from Priestia megaterium (Bacillus megaterium) (see 2 papers)
40% identity, 82% coverage: 5:79/91 of query aligns to 3:77/88 of O69250

query
sites
O69250
E
 
Q
R
 
K
Q
 
T
V
 
F
T
 
T
I
 
V
C
 
T
N
 
A
K
 
D
L
 
S
G
 
G
L
 
I
H
 
H
A
 
A
R
 
R
A
 
P
A
 
A
T
 
T
K
 
T
L
 
L
V
 
V
V
 
Q
L
 
A
A
 
A
S
 
S
E
 
K
F
 
F
D
 
D
A
 
S
S
 
D
I
 
I
T
 
N
L
 
L
I
 
E
Q
 
F
G
 
N
E
 
G
K
 
K
Q
 
T
A
 
V
S
 
N
A
 
L
A
 
K
S
|
S
V
 
I
L
 
M
G
 
G
L
 
V
L
 
M
M
 
S
L
 
L
E
 
G
T
 
I
G
 
Q
M
 
K
G
 
G
K
 
A
T
 
T
I
 
I
T
 
T
L
 
I
I
 
S
A
 
A
E
 
E
G
 
G
P
 
S
D
 
D
A
 
E
E
 
A
P
 
D
A
 
A
L
 
L
N
 
A
A
 
A
I
 
L

O06976 HPr-like protein Crh; Catabolite repression HPr from Bacillus subtilis (strain 168) (see 3 papers)
34% identity, 88% coverage: 4:83/91 of query aligns to 2:81/85 of O06976

query
sites
O06976
L
 
V
E
 
Q
R
 
Q
Q
 
K
V
 
V
T
 
E
I
 
V
C
 
R
N
 
L
K
 
K
L
 
T
G
 
G
L
 
L
H
x
Q
A
 
A
R
 
R
A
 
P
A
 
A
T
 
A
K
 
L
L
 
F
V
 
V
V
 
Q
L
 
E
A
 
A
S
 
N
E
 
R
F
 
F
D
 
T
A
 
S
S
 
D
I
 
V
T
 
F
L
 
L
I
 
E
Q
 
K
G
 
D
E
 
G
K
 
K
Q
 
K
A
 
V
S
 
N
A
 
A
A
 
K
S
|
S
V
 
I
L
 
M
G
 
G
L
 
L
L
 
M
M
 
S
L
 
L
E
 
A
T
 
V
G
 
S
M
 
T
G
 
G
K
 
T
T
 
E
I
 
V
T
 
T
L
 
L
I
 
I
A
 
A
E
 
Q
G
 
G
P
 
E
D
 
D
A
 
E
E
 
Q
P
 
E
A
 
A
L
 
L
N
 
E
A
 
K
I
 
L
C
 
A
A
 
A
L
 
Y
I
 
V

P08877 Phosphocarrier protein HPr; Histidine-containing protein from Bacillus subtilis (strain 168) (see 5 papers)
42% identity, 71% coverage: 15:79/91 of query aligns to 13:77/88 of P08877

query
sites
P08877
G
 
G
L
 
I
H
|
H
A
 
A
R
 
R
A
 
P
A
 
A
T
 
T
K
 
V
L
 
L
V
 
V
V
 
Q
L
 
T
A
 
A
S
 
S
E
 
K
F
 
Y
D
 
D
A
 
A
S
 
D
I
 
V
T
 
N
L
 
L
I
 
E
Q
 
Y
G
 
N
E
 
G
K
 
K
Q
 
T
A
 
V
S
 
N
A
 
L
A
 
K
S
|
S
V
 
I
L
 
M
G
 
G
L
 
V
L
 
M
M
 
S
L
 
L
E
 
G
T
 
I
G
 
A
M
 
K
G
 
G
K
 
A
T
 
E
I
 
I
T
 
T
L
 
I
I
 
S
A
 
A
E
 
S
G
 
G
P
 
A
D
 
D
A
 
E
E
 
N
P
 
D
A
 
A
L
 
L
N
 
N
A
 
A
I
 
L

Sites not aligning to the query:

1pohA The 2.0 angstroms resolution structure of escherichia coli histidine- containing phosphocarrier protein hpr: a redetermination (see paper)
35% identity, 88% coverage: 4:83/91 of query aligns to 2:81/85 of 1pohA

query
sites
1pohA
L
 
F
E
 
Q
R
 
Q
Q
 
E
V
 
V
T
 
T
I
 
I
C
 
T
N
 
A
K
 
P
L
 
N
G
 
G
L
 
L
H
 
H
A
 
T
R
 
R
A
 
P
A
 
A
T
 
A
K
 
Q
L
 
F
V
 
V
V
 
K
L
 
E
A
 
A
S
 
K
E
 
G
F
 
F
D
 
T
A
 
S
S
 
E
I
 
I
T
 
T
L
 
V
I
 
T
Q
 
S
G
x
N
E
 
G
K
|
K
Q
 
S
A
 
A
S
 
S
A
 
A
A
 
K
S
 
S
V
 
L
L
 
F
G
 
K
L
 
L
L
 
Q
M
 
T
L
 
L
E
 
G
T
 
L
G
 
T
M
 
Q
G
 
G
K
 
T
T
 
V
I
 
V
T
 
T
L
 
I
I
 
S
A
 
A
E
 
E
G
 
G
P
 
E
D
 
D
A
 
E
E
 
Q
P
 
K
A
 
A
L
 
V
N
 
E
A
 
H
I
 
L
C
 
V
A
 
K
L
 
L
I
 
M

1j6tB Complex of enzyme iiamtl and the histidine-containing phosphocarrier protein hpr from escherichia coli nmr, restrained regularized mean structure (see paper)
35% identity, 88% coverage: 4:83/91 of query aligns to 2:81/85 of 1j6tB

query
sites
1j6tB
L
 
F
E
 
Q
R
 
Q
Q
 
E
V
 
V
T
 
T
I
 
I
C
 
T
N
 
A
K
 
P
L
 
N
G
 
G
L
 
L
H
|
H
A
x
T
R
 
R
A
 
P
A
 
A
T
 
A
K
 
Q
L
 
F
V
 
V
V
 
K
L
 
E
A
 
A
S
 
K
E
 
G
F
 
F
D
 
T
A
 
S
S
 
E
I
 
I
T
 
T
L
 
V
I
 
T
Q
 
S
G
 
N
E
 
G
K
 
K
Q
 
S
A
 
A
S
 
S
A
 
A
A
 
K
S
 
S
V
 
L
L
 
F
G
 
K
L
 
L
L
 
Q
M
 
T
L
 
L
E
 
G
T
 
L
G
 
T
M
 
Q
G
 
G
K
 
T
T
 
V
I
 
V
T
 
T
L
 
I
I
 
S
A
 
A
E
 
E
G
 
G
P
 
E
D
 
D
A
 
E
E
 
Q
P
 
K
A
 
A
L
 
V
N
 
E
A
 
H
I
 
L
C
 
V
A
 
K
L
 
L
I
 
M

P0AA04 Phosphocarrier protein HPr; Histidine-containing protein from Escherichia coli (strain K12) (see paper)
35% identity, 88% coverage: 4:83/91 of query aligns to 2:81/85 of P0AA04

query
sites
P0AA04
L
 
F
E
 
Q
R
 
Q
Q
 
E
V
 
V
T
 
T
I
 
I
C
 
T
N
 
A
K
 
P
L
 
N
G
 
G
L
 
L
H
|
H
A
 
T
R
 
R
A
 
P
A
 
A
T
 
A
K
 
Q
L
 
F
V
 
V
V
 
K
L
 
E
A
 
A
S
 
K
E
 
G
F
 
F
D
 
T
A
 
S
S
 
E
I
 
I
T
 
T
L
 
V
I
 
T
Q
 
S
G
 
N
E
 
G
K
 
K
Q
 
S
A
 
A
S
 
S
A
 
A
A
 
K
S
 
S
V
 
L
L
 
F
G
 
K
L
 
L
L
 
Q
M
 
T
L
 
L
E
 
G
T
 
L
G
 
T
M
 
Q
G
 
G
K
 
T
T
 
V
I
 
V
T
 
T
L
 
I
I
 
S
A
 
A
E
 
E
G
 
G
P
 
E
D
 
D
A
 
E
E
 
Q
P
 
K
A
 
A
L
 
V
N
 
E
A
 
H
I
 
L
C
 
V
A
 
K
L
 
L
I
 
M

P75061 Phosphocarrier protein HPr; Histidine-containing protein from Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1) (Mycoplasmoides pneumoniae) (see paper)
33% identity, 86% coverage: 7:84/91 of query aligns to 5:83/88 of P75061

query
sites
P75061
Q
 
Q
V
 
V
T
 
V
I
 
V
C
 
K
N
 
D
K
 
P
L
 
V
G
 
G
L
 
I
H
 
H
A
 
A
R
 
R
A
 
P
A
 
A
T
 
S
K
 
I
L
 
I
V
 
A
V
 
G
L
 
E
A
 
A
S
 
N
E
 
K
F
 
F
D
 
K
A
 
S
S
 
E
I
 
L
T
 
K
L
 
L
I
 
V
Q
 
S
G
 
P
E
 
S
K
 
G
-
 
V
Q
 
E
A
 
G
S
 
N
A
 
I
A
 
K
S
|
S
V
 
I
L
 
I
G
 
N
L
 
L
L
 
M
M
 
S
L
 
L
E
 
G
T
 
I
G
 
K
M
 
Q
G
 
N
K
 
D
T
 
H
I
 
I
T
 
T
L
 
I
I
 
K
A
 
A
E
 
E
G
 
G
P
 
T
D
 
D
A
 
E
E
 
E
P
 
E
A
 
A
L
 
L
N
 
N
A
 
A
I
 
I
C
 
K
A
 
A
L
 
V
I
 
L
D
 
E

Q9F166 Phosphocarrier protein HPr from Bacillus thuringiensis subsp. israelensis (see 2 papers)
36% identity, 84% coverage: 4:79/91 of query aligns to 1:76/87 of Q9F166

query
sites
Q9F166
L
 
M
E
 
E
R
 
K
Q
 
I
V
 
F
T
 
K
I
 
V
C
 
T
N
 
S
K
 
D
L
 
S
G
 
G
L
 
I
H
|
H
A
 
A
R
 
R
A
 
P
A
 
A
T
 
T
K
 
L
L
 
L
V
 
V
V
 
N
L
 
T
A
 
A
S
 
S
E
 
K
F
 
F
D
 
G
A
 
S
S
 
D
I
 
I
T
 
N
L
 
L
I
 
E
Q
 
Y
G
 
N
E
 
G
K
 
K
Q
 
N
A
 
V
S
 
N
A
 
L
A
 
K
S
|
S
V
 
I
L
 
M
G
 
G
L
 
V
L
 
M
M
 
S
L
 
L
E
 
G
T
 
I
G
 
Q
M
 
Q
G
 
N
K
 
A
T
 
E
I
 
I
T
 
K
L
 
I
I
 
T
A
 
A
E
 
N
G
 
G
P
 
D
D
 
D
A
 
A
E
 
A
P
 
Q
A
 
A
L
 
L
N
 
A
A
 
A
I
 
I

Q9WXK8 Phosphocarrier protein HPr; Histidine-containing protein from Streptococcus equinus (Streptococcus bovis) (see paper)
39% identity, 70% coverage: 6:69/91 of query aligns to 4:67/87 of Q9WXK8

query
sites
Q9WXK8
R
 
K
Q
 
D
V
 
F
T
 
H
I
 
I
C
 
V
N
 
A
K
 
E
L
 
T
G
 
G
L
 
I
H
 
H
A
 
A
R
 
R
A
 
P
A
 
A
T
 
T
K
 
L
L
 
L
V
 
V
V
 
Q
L
 
T
A
 
A
S
 
S
E
 
K
F
 
F
D
 
A
A
 
S
S
 
D
I
 
I
T
 
T
L
 
L
I
 
D
Q
 
Y
G
 
K
E
 
G
K
 
K
Q
 
A
A
 
V
S
 
N
A
 
L
A
 
K
S
|
S
V
 
I
L
 
M
G
 
G
L
 
V
L
 
M
M
 
S
L
 
L
E
 
G
T
 
V
G
 
G
M
 
Q
G
 
G
K
 
A
T
 
D
I
 
V
T
 
T
L
 
I
I
 
S
A
 
A
E
 
E
G
 
G

Query Sequence

>SO3965
MPKLERQVTICNKLGLHARAATKLVVLASEFDASITLIQGEKQASAASVLGLLMLETGMG
KTITLIAEGPDAEPALNAICALIDAKFDEAS

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SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory