Comparing Synpcc7942_0039 FitnessBrowser__SynE:Synpcc7942_0039 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2w90B Geobacillus stearothermophilus 6-phosphogluconate dehydrogenase with bound 6- phosphogluconate (see paper)
63% identity, 100% coverage: 1:471/471 of query aligns to 3:470/471 of 2w90B
P00350 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Escherichia coli (strain K12) (see paper)
58% identity, 100% coverage: 1:471/471 of query aligns to 1:467/468 of P00350
3fwnB Dimeric 6-phosphogluconate dehydrogenase complexed with 6- phosphogluconate and 2'-monophosphoadenosine-5'-diphosphate (see paper)
58% identity, 99% coverage: 4:471/471 of query aligns to 3:466/467 of 3fwnB
3fwnA Dimeric 6-phosphogluconate dehydrogenase complexed with 6- phosphogluconate and 2'-monophosphoadenosine-5'-diphosphate (see paper)
58% identity, 99% coverage: 4:471/471 of query aligns to 3:466/467 of 3fwnA
7cb2A The 6-phosphogluconate dehydrogenase (NADP-bound) from staphylococcus aureus
57% identity, 99% coverage: 4:471/471 of query aligns to 3:466/466 of 7cb2A
7cb5B The 6-phosphogluconate dehydrogenase from staphylococcus aureus (6- phosphogluconate bound) (see paper)
57% identity, 99% coverage: 4:471/471 of query aligns to 3:466/467 of 7cb5B
2zydA Dimeric 6-phosphogluconate dehydrogenase complexed with glucose (see paper)
58% identity, 99% coverage: 4:470/471 of query aligns to 2:464/464 of 2zydA
P96789 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Lactococcus lactis subsp. cremoris (strain MG1363) (see paper)
54% identity, 100% coverage: 1:471/471 of query aligns to 1:469/472 of P96789
2iypA Product rup (see paper)
54% identity, 100% coverage: 1:471/471 of query aligns to 1:469/469 of 2iypA
2iyoA Structural characterization of a bacterial 6pdh reveals aspects of specificity, mechanism and mode of inhibition (see paper)
54% identity, 100% coverage: 1:471/471 of query aligns to 1:469/470 of 2iyoA
2iz1B 6pdh complexed with pex inhibitor synchrotron data (see paper)
54% identity, 100% coverage: 1:471/471 of query aligns to 3:471/471 of 2iz1B
2iypB Product rup (see paper)
54% identity, 100% coverage: 1:471/471 of query aligns to 2:470/470 of 2iypB
8i4qA Crystal structure of 6-phosphogluconate dehydrogenase from corynebacterium glutamicum (see paper)
54% identity, 99% coverage: 3:470/471 of query aligns to 2:470/479 of 8i4qA
2p4qA Crystal structure analysis of gnd1 in saccharomyces cerevisiae (see paper)
54% identity, 96% coverage: 6:457/471 of query aligns to 5:454/476 of 2p4qA
P78812 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
53% identity, 99% coverage: 6:470/471 of query aligns to 9:478/492 of P78812
1pgqA Crystallographic study of coenzyme, coenzyme analogue and substrate binding in 6-phosphogluconate dehydrogenase: implications for NADP specificity and the enzyme mechanism (see paper)
53% identity, 98% coverage: 8:470/471 of query aligns to 7:468/473 of 1pgqA
1pgpA Crystallographic study of coenzyme, coenzyme analogue and substrate binding in 6-phosphogluconate dehydrogenase: implications for NADP specificity and the enzyme mechanism (see paper)
53% identity, 98% coverage: 8:470/471 of query aligns to 7:468/473 of 1pgpA
1pgoA Crystallographic study of coenzyme, coenzyme analogue and substrate binding in 6-phosphogluconate dehydrogenase: implications for NADP specificity and the enzyme mechanism (see paper)
53% identity, 98% coverage: 8:470/471 of query aligns to 7:468/473 of 1pgoA
1pgnA Crystallographic study of coenzyme, coenzyme analogue and substrate binding in 6-phosphogluconate dehydrogenase: implications for NADP specificity and the enzyme mechanism (see paper)
53% identity, 98% coverage: 8:470/471 of query aligns to 7:468/473 of 1pgnA
P52209 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Homo sapiens (Human)
53% identity, 100% coverage: 1:470/471 of query aligns to 1:469/483 of P52209
Sites not aligning to the query:
>Synpcc7942_0039 FitnessBrowser__SynE:Synpcc7942_0039
MALQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQGKNIVPAYSLED
FVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERRVKDLEALG
LGFMGMGVSGGEEGALNGPSLMPGGTQAAYEAVEPIVRSIAAQVDDGPCVTYIGPGGSGH
YVKMVHNGIEYGDMQLIAEAYDLLKSVAGLNASELHDVFAAWNKTPELDSFLIEITADIF
TKVDDLGTGQPLVELILDAAGQKGTGRWTVETALEIGVAIPTIIAAVNARILSSIKAERQ
AASEILSGPITEPFSGDRQAFIDSVRDALYCSKICSYAQGMALLAKASQVYNYGLNLGEL
ARIWKGGCIIRAGFLNKIKQAYDADPTLANLLLAPEFRQTILDRQLAWRRVIAIAAERGI
PVPAFSASLDYFDSYRRDRLPQNLTQAQRDYFGAHTYERTDRSGSFHAQWF
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory