Comparing Synpcc7942_0125 FitnessBrowser__SynE:Synpcc7942_0125 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P34047 Imidazoleglycerol-phosphate dehydratase 1, chloroplastic; IGPD 1; Protein HISTIDINE BIOSYNTHESIS 5A; EC 4.2.1.19 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
66% identity, 93% coverage: 16:209/209 of query aligns to 74:267/270 of P34047
O23346 Imidazoleglycerol-phosphate dehydratase 2, chloroplastic; IGPD 2; Protein HISTIDINE BIOSYNTHESIS 5B; EC 4.2.1.19 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
65% identity, 96% coverage: 10:209/209 of query aligns to 70:269/272 of O23346
5el9A A. Thaliana igpd2 in complex with the triazole-phosphonate inhibitor, (s)-c348, to 1.1a resolution (see paper)
66% identity, 94% coverage: 14:209/209 of query aligns to 1:196/199 of 5el9A
5ekwA A. Thaliana igpd2 in complex with the racemate of the triazole- phosphonate inhibitor, c348 (see paper)
65% identity, 93% coverage: 14:207/209 of query aligns to 1:194/194 of 5ekwA
4qnkA The structure of wt a. Thaliana igpd2 in complex with mn2+ and phosphate (see paper)
65% identity, 89% coverage: 14:198/209 of query aligns to 1:185/185 of 4qnkA
4mu1A The structure of wt a. Thaliana igpd2 in complex with mn2+, imidazole, and sulfate at 1.5 a resolution (see paper)
65% identity, 89% coverage: 14:198/209 of query aligns to 1:185/185 of 4mu1A
4mu0A The structure of wt a. Thaliana igpd2 in complex with mn2+ and 1,2,4- triazole at 1.3 a resolution (see paper)
65% identity, 89% coverage: 14:198/209 of query aligns to 1:185/185 of 4mu0A
4mu3A The form a structure of an e21q catalytic mutant of a. Thaliana igpd2 in complex with mn2+ and a mixture of its substrate, 2r3s-igp, and an inhibitor, 2s3s-igp, to 1.12 a resolution (see paper)
64% identity, 89% coverage: 14:199/209 of query aligns to 1:186/186 of 4mu3A
7oj5A Cryo-em structure of medicago truncatula hisn5 protein
65% identity, 88% coverage: 16:198/209 of query aligns to 2:184/184 of 7oj5A
2f1dA X-ray structure of imidazoleglycerol-phosphate dehydratase (see paper)
65% identity, 87% coverage: 16:197/209 of query aligns to 2:183/183 of 2f1dA
Q9S5G5 Histidine biosynthesis bifunctional protein HisB; EC 3.1.3.15; EC 4.2.1.19 from Escherichia coli O157:H7 (see paper)
50% identity, 93% coverage: 16:209/209 of query aligns to 167:355/355 of Q9S5G5
Sites not aligning to the query:
6fwhL Acanthamoeba igpd in complex with r-c348 to 1.7a resolution (see paper)
47% identity, 93% coverage: 16:209/209 of query aligns to 2:194/195 of 6fwhL
6fwhA Acanthamoeba igpd in complex with r-c348 to 1.7a resolution (see paper)
47% identity, 93% coverage: 16:209/209 of query aligns to 3:195/196 of 6fwhA
P9WML9 Imidazoleglycerol-phosphate dehydratase; IGPD; EC 4.2.1.19 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
45% identity, 88% coverage: 26:209/209 of query aligns to 21:210/210 of P9WML9
7fcyA Crystal structure of m.Tuberculosis imidazole glycerol phosphate dehydratase in complex with an inhibitor
44% identity, 82% coverage: 26:197/209 of query aligns to 12:190/190 of 7fcyA
7dnqA Crystal structure of m.Tuberculosis imidazole glycerol phosphate dehydratase in complex with an inhibitor
44% identity, 82% coverage: 26:197/209 of query aligns to 12:190/190 of 7dnqA
7ddvA Crystal structure of m.Tuberculosis imidazole glycerol phosphate dehydratase in complex with an inhibitor
44% identity, 82% coverage: 26:197/209 of query aligns to 12:190/190 of 7ddvA
4lpfA Crystal structure of mycobacterium tuberculosis imidazole glycerol phosphate dehydratase in complex with an inhibitor
44% identity, 82% coverage: 26:197/209 of query aligns to 12:190/190 of 4lpfA
5xdsA Crystal structure of mycobacterium tuberculosis hisb bound with an inhibitor (see paper)
44% identity, 82% coverage: 26:197/209 of query aligns to 12:190/191 of 5xdsA
4lomA Crystal structure of mycobacterium tuberculosis hisb in complex with its substrate
44% identity, 82% coverage: 26:197/209 of query aligns to 12:190/191 of 4lomA
>Synpcc7942_0125 FitnessBrowser__SynE:Synpcc7942_0125
MQLSDRPLTAPGTAPRQATVSRRTGETDVQVFLNLDGTGRCQADTGIPFLDHMFDQIASH
GLIDLEITAKGDLHIDDHHTNEDVGITFGLALAEALGDRKGIVRFGHFVAPLDEALVQVA
LDFSGRPHLTYGLTLPTERVGTYETQLVREFFVAIANNAKLTLHLRQLDGINSHHIIEAT
FKAFARSLRMATEVDPRRAGQIPSSKGVL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory