Comparing Synpcc7942_0221 FitnessBrowser__SynE:Synpcc7942_0221 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
1sz2B Crystal structure of e. Coli glucokinase in complex with glucose (see paper)
32% identity, 96% coverage: 5:335/345 of query aligns to 5:309/320 of 1sz2B
6da0A Crystal structure of glucokinase (nfhk) from naegleria fowleri (see paper)
22% identity, 81% coverage: 8:287/345 of query aligns to 32:318/378 of 6da0A
Sites not aligning to the query:
8dtcA Crystal structure of glucokinase with bound glucose from acanthamoeba castellanii
26% identity, 81% coverage: 8:287/345 of query aligns to 30:318/374 of 8dtcA
>Synpcc7942_0221 FitnessBrowser__SynE:Synpcc7942_0221
MTLLLAGDIGGTKTNLMLAIASDCDRLEPLHQASFASAAYPDLVPMVQEFLAAAPSAEVR
SPVVACFGIAGPVVHGTAKLTNLPWQLSEARLAKELGIAQVALINDFAAIAYGLPGLTAE
DQVVVQVGEADPAAPIAILGAGTGLGEGFIIPTAQGRQVFGSEGSHADFAPQTELESELL
HFLRNFYAIEHISVERVVSGQGIAAIYAFLRDRHPDQENPALGAIASAWQTGGDQAPDLA
AAVSQAALSDRDPLALQAMQIFVSAYGAEAGNLALKLLSYGGVYVAGGIAGKILPLLTDG
TFLQAFQAKGRVKGLLTRMPITIVTNHEVGLIGAGLRAAAIATQP
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory