SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Synpcc7942_0247 FitnessBrowser__SynE:Synpcc7942_0247 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
31% identity, 34% coverage: 245:372/377 of query aligns to 88:215/215 of 4ymtC

query
sites
4ymtC
F
 
F
T
 
T
A
 
A
L
 
G
L
 
V
L
 
S
G
 
A
L
 
L
V
 
A
A
 
I
Y
x
N
T
 
S
G
 
S
A
 
A
F
x
Y
I
 
V
T
 
A
E
 
E
I
 
I
I
 
I
R
 
R
G
 
A
G
 
G
I
 
I
L
 
Q
S
 
A
V
 
V
P
 
D
A
 
P
G
 
G
Q
 
Q
W
 
N
E
 
E
A
 
A
A
 
A
A
 
R
A
 
S
L
 
L
G
 
G
L
 
M
T
 
T
R
 
H
S
 
A
Q
 
M
T
 
A
L
 
M
W
 
R
Q
 
Y
I
 
V
V
 
I
V
 
I
P
 
P
Q
 
Q
A
 
A
L
 
I
R
 
K
V
 
N
I
 
I
V
 
L
P
 
P
S
 
A
L
 
L
N
 
G
S
 
N
Q
x
E
Y
 
F
V
 
I
G
 
V
F
x
M
A
 
L
K
|
K
N
x
E
S
 
S
S
 
A
L
 
I
A
 
V
I
 
S
A
 
V
V
 
I
G
 
G
Y
 
F
P
 
A
D
 
D
L
 
L
Y
 
T
A
 
R
T
 
Q
A
 
A
Q
 
D
T
 
I
T
 
I
L
 
Q
N
 
S
Q
 
V
T
 
T
G
 
Y
R
 
R
P
 
Y
V
 
F
E
 
E
V
 
P
F
 
Y
L
 
I
I
 
I
L
 
I
M
 
A
L
 
A
T
 
I
Y
 
Y
L
 
F
A
 
V
I
 
M
N
 
T
A
 
L
V
 
T
I
 
F
S
 
S
A
 
K
G
 
L
M
 
L
N
 
S
G
 
L
L
 
F
Q
 
E
Q
 
R
R
 
R
L
 
L
Q
 
R

Sites not aligning to the query:

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
31% identity, 34% coverage: 245:371/377 of query aligns to 88:214/214 of 4ymwC

query
sites
4ymwC
F
 
F
T
 
T
A
 
A
L
 
G
L
 
V
L
 
S
G
 
A
L
 
L
V
 
A
A
 
I
Y
x
N
T
 
S
G
 
S
A
 
A
F
x
Y
I
 
V
T
 
A
E
 
E
I
 
I
I
 
I
R
 
R
G
 
A
G
 
G
I
 
I
L
 
Q
S
 
A
V
 
V
P
 
D
A
 
P
G
 
G
Q
 
Q
W
 
N
E
 
E
A
 
A
A
 
A
A
 
R
A
 
S
L
 
L
G
 
G
L
 
M
T
 
T
R
 
H
S
 
A
Q
 
M
T
 
A
L
 
M
W
 
R
Q
 
Y
I
 
V
V
 
I
V
 
I
P
 
P
Q
 
Q
A
 
A
L
 
I
R
 
K
V
 
N
I
 
I
V
 
L
P
 
P
S
 
A
L
 
L
N
 
G
S
 
N
Q
x
E
Y
 
F
V
 
I
G
 
V
F
 
M
A
 
L
K
 
K
N
x
E
S
 
S
S
 
A
L
 
I
A
 
V
I
 
S
A
 
V
V
 
I
G
 
G
Y
 
F
P
 
A
D
 
D
L
 
L
Y
 
T
A
 
R
T
 
Q
A
 
A
Q
 
D
T
 
I
T
 
I
L
 
Q
N
 
S
Q
 
V
T
 
T
G
 
Y
R
 
R
P
 
Y
V
 
F
E
 
E
V
 
P
F
 
Y
L
 
I
I
 
I
L
 
I
M
 
A
L
 
A
T
 
I
Y
 
Y
L
 
F
A
 
V
I
 
M
N
 
T
A
 
L
V
 
T
I
 
F
S
 
S
A
 
K
G
 
L
M
 
L
N
 
S
G
 
L
L
 
F
Q
 
E
Q
 
R
R
 
R
L
 
L

Query Sequence

>Synpcc7942_0247 FitnessBrowser__SynE:Synpcc7942_0247
MPFRLKLQGPFWRDERLWRWVWQLLVLLVVGLGAIWLVDNLVYNLSQRGLSLSFDWLDQS
AGFNIGESAIAYRTADSYARALVVGLVNSLRVIAIGLILTTVIGTLAGVAAFSENWLLRQ
LSRGYVAVVRNTPLLLQLIVWYFPILLSLPAAQQPWHWLGSLYLSKQGIYLPWPQTPGWL
VVILAIALVLFVSWLAQRQRSPRDWRWLYGAIAVVTVLMLLTQLSWPQQLQPGQIRGGLR
LSLEFTALLLGLVAYTGAFITEIIRGGILSVPAGQWEAAAALGLTRSQTLWQIVVPQALR
VIVPSLNSQYVGFAKNSSLAIAVGYPDLYATAQTTLNQTGRPVEVFLILMLTYLAINAVI
SAGMNGLQQRLQRWGVR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory