Comparing Synpcc7942_0248 FitnessBrowser__SynE:Synpcc7942_0248 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
30% identity, 52% coverage: 189:392/396 of query aligns to 17:214/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
30% identity, 52% coverage: 189:392/396 of query aligns to 17:214/214 of 4ymwC
>Synpcc7942_0248 FitnessBrowser__SynE:Synpcc7942_0248
MMRSPQGITPQQTPIAWLRQNLFSSWLNSAITLLLVVIIVTVVGRLGLWITTEARWTVLV
DNWTLFFVGRYPAAEQWRLWLWLGLLSPTLGLTWGCLATGSHRWQRRSLWGWAGLAAAIA
GIPLPWFPHKLGLAAIAATVPAASWLAQRCRGQAWLRFLPTLWGVLFLVGLWLLQGGLGL
RPVSSNDWSGLLLTLATALISMVCSLPLGILLALGRQSSLPAIRWLSVTYIELFRGLPLV
TILFFGQVMVPLMLDSEWRIDRILRAIVGLTIFLSAYLAETVRGGLQAIPQGQFEAAAAL
GLNLFQTYRFIVLPQALRISIPAIVGLFLNLLQDTTLLSIVGLLELLGISRSILANPAYL
GRYAEVYLFLGVLYWLCCYGLAQLSRRLEQRLTPQR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory