Comparing Synpcc7942_0411 FitnessBrowser__SynE:Synpcc7942_0411 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5ey5A Lbcats
52% identity, 97% coverage: 1:259/266 of query aligns to 1:256/261 of 5ey5A
6uapC Crystal structure of tryptophan synthase from m. Tuberculosis - open form with brd6309 bound
39% identity, 88% coverage: 8:242/266 of query aligns to 8:231/250 of 6uapC
6usaA Crystal structure of tryptophan synthase from m. Tuberculosis - aminoacrylate- and gsk1-bound form (see paper)
39% identity, 88% coverage: 8:242/266 of query aligns to 9:230/249 of 6usaA
6u6cA Crystal structure of tryptophan synthase from m. Tuberculosis - aminoacrylate- and gsk2-bound form (see paper)
39% identity, 88% coverage: 8:242/266 of query aligns to 9:230/249 of 6u6cA
6dweA Crystal structure of tryptophan synthase from m. Tuberculosis - aminoacrylate- and brd0059-bound form
39% identity, 88% coverage: 8:242/266 of query aligns to 9:230/249 of 6dweA
5tciA Crystal structure of tryptophan synthase from m. Tuberculosis - brd4592-bound form (see paper)
39% identity, 88% coverage: 8:242/266 of query aligns to 9:230/249 of 5tciA
6u6cE Crystal structure of tryptophan synthase from m. Tuberculosis - aminoacrylate- and gsk2-bound form (see paper)
39% identity, 88% coverage: 8:242/266 of query aligns to 8:228/245 of 6u6cE
Sites not aligning to the query:
8b08A Tryptophan synthase - cryo-trapping by the spitrobot crystal plunger after 30 sec (see paper)
35% identity, 97% coverage: 1:259/266 of query aligns to 2:260/269 of 8b08A
1k3uA Crystal structure of wild-type tryptophan synthase complexed with n- [1h-indol-3-yl-acetyl]aspartic acid (see paper)
35% identity, 97% coverage: 1:259/266 of query aligns to 1:259/268 of 1k3uA
1tjpA Crystal structure of wild-type tryptophan synthase complexed with 1- [(2-hydroxylphenyl)amino]3-glycerolphosphate (see paper)
35% identity, 97% coverage: 1:259/266 of query aligns to 1:259/267 of 1tjpA
2clkA Tryptophan synthase in complex with d-glyceraldehyde 3- phosphate (g3p) (see paper)
34% identity, 97% coverage: 1:259/266 of query aligns to 1:259/267 of 2clkA
7jllA The internal aldimine crystal structure of salmonella typhimurium tryptophan synthase mutant beta-s377a in complex with inhibitor 2- ({[4-(trifluoromethoxy)phenyl]sulfonyl}amino)ethyl dihydrogen phosphate (f9f) at the alpha-site, cesium ion at the metal coordination site and l-tryptophan at the enzyme beta-site
35% identity, 95% coverage: 6:259/266 of query aligns to 5:258/267 of 7jllA
6xncA Salmonella typhimurium tryptophan synthase complexed with l-tryptophan and d-glycerol-3-phosphate (see paper)
35% identity, 95% coverage: 6:259/266 of query aligns to 5:258/267 of 6xncA
3cepA Structure of a tryptophan synthase quinonoid intermediate (see paper)
35% identity, 95% coverage: 6:259/266 of query aligns to 5:258/266 of 3cepA
2trsA Crystal structures of mutant (betak87t) tryptophan synthase alpha2 beta2 complex with ligands bound to the active sites of the alpha and beta subunits reveal ligand-induced conformational changes (see paper)
35% identity, 97% coverage: 1:259/266 of query aligns to 1:253/262 of 2trsA
1cx9A Crystal structure of the complex of bacterial tryptophan synthase with the transition state analogue inhibitor 4-(2-aminophenylthio)- butylphosphonic acid (see paper)
35% identity, 95% coverage: 6:259/266 of query aligns to 5:256/264 of 1cx9A
1cw2A Crystal structure of the complex of bacterial tryptophan synthase with the transition state analogue inhibitor 4-(2-hydroxyphenylsulfinyl)- butylphosphonic acid (see paper)
35% identity, 95% coverage: 6:259/266 of query aligns to 5:256/264 of 1cw2A
1c9dA Crystal structure of the complex of bacterial tryptophan synthase with the transition state analogue inhibitor 4-(2-hydroxy-4- fluorophenylthio)-butylphosphonic acid (see paper)
35% identity, 95% coverage: 6:259/266 of query aligns to 5:256/264 of 1c9dA
1c29A Crystal structure of the complex of bacterial tryptophan synthase with the transition state analogue inhibitor 4-(2-hydroxyphenylthio)-1- butenylphosphonic acid (see paper)
35% identity, 95% coverage: 6:259/266 of query aligns to 5:256/264 of 1c29A
2clhA Tryptophan synthase in complex with (naphthalene-2'-sulfonyl)-2-amino- 1-ethylphosphate (f19) (see paper)
35% identity, 97% coverage: 1:259/266 of query aligns to 1:250/258 of 2clhA
>Synpcc7942_0411 FitnessBrowser__SynE:Synpcc7942_0411
MTAISDCFAALRSQGRCALIPFLTAGDPDLETTRQALLALDREGADLIELGVPYSDPLAD
GPVIQAAATRALQAGTRLDDVLALLKDVRSQIKAPIVLFTYCNPILNRGFEAFLDQIAAA
GANGLVVPDLPLEESQRLSEVAAERGIDLILLIAPTSSADRIAAISKQARGFIYLVSVTG
VTGMRQGMQSRVADLLQEIRQGTDKPIGVGFGISGAEQARQVRDWGADGVIVGSAFVNRL
QEQGVEGVATLCRELRQAIDRQPVLS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory