Comparing Synpcc7942_0414 FitnessBrowser__SynE:Synpcc7942_0414 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
Q8TPT4 L-aspartate semialdehyde sulfurtransferase; EC 2.8.1.16 from Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (see 2 papers)
42% identity, 97% coverage: 2:381/390 of query aligns to 4:373/500 of Q8TPT4
Q57564 L-aspartate semialdehyde sulfurtransferase; EC 2.8.1.16 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
44% identity, 95% coverage: 1:370/390 of query aligns to 3:375/509 of Q57564
Sites not aligning to the query:
>Synpcc7942_0414 FitnessBrowser__SynE:Synpcc7942_0414
MRTIAEINEKIQAGRAVVWTATEVKARAPELGIAAIAQQVDVITTGTFEPMEASGAILNL
GQTDPPIKIRQCWLNDVRAYSGFGAADLLLGASEESEDPEAEYGGGQVIADLIAGQKVRL
RAIGQGTDCYPRRSFETTIDRDSINQFYLFNPRNLYQNFIVGVNGGDETLYTYLGPLLPN
LGNAVYANPGAIAPLFNDPDLVSIGIGTRIFLGGGVGYIAWEGTQHFPLQKRLPNRTPVG
PAATLALIGDAKQMLPDWVRGCYFQNYGASLMLGVGIPLAVTTEAVVAACAVTDDQIVAP
VVDFSIPRRVRPTFGLVSYAKLKSGSIMLEGQRIRTAPLASLYRSQQVAELLKQWIEAGE
FLLTEPVASLPSDRQFQPQDQRSPSALNDE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory